Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00518 ATGTATAGCATGGATTCATCTTCAGGTTCTCACTCTCAGCATCTACAACTCCCTCCCGGTTTTCGCTTCCACCCCACAGATGAGGAACTAATCCTTCACTACCTCAAGAGAAAAGCAGACTCTACTCCTCTTCCTGTTGCTATCATAGCCGAGGTTGATCTCTACAAGTTCGACCCATGGGAGCTCCCAAGTAAGGCAACGTTTGGTGAGCAAGAGTGGTATTTTTTCAGTCCAAGGGATAGGAAATACCCAAATGGGACGAGGCCTAATAGGGCTGCTACTTCTGGGTATTGGAAAGCTACAGGAATTGACAAGCCTATAATAGCATCTAATGGGCACCACAAAGTTGGAGTTAAGAAAGCCCTTGTTTTTTATGGAGGGAAGCCTCCAAAAGGGATAAAAACCAATTGGATCATGCACGAATATAGACTTGTTGATAATTCCTTGAATCGTAGCTTGAAGCCACCTTCTATGACTGCTGATCCTGCACGCAGTGGCAAGAAGAACTCCTTGAGGCTTGATGATTGGGTTTTGTGCCGAATATATAAGAAAAGCAACAATACCAGCTTGCCAAGACTACCCTTGATGGAGCAGGATAAGGAGTTTTCTACGGAGAGTATGCAACCAACGATGTCAACTTTGTCAATGGCTAACACTTATCAAAATTCCAAACCCACATCTTCCAGAAGTGCAAGTTATGGACCACTGGGACTTGGAAACGATGACAACTTCTTCGATGGAATCTTAGCAGCTGATCAGAGCATGCAGAATGGTTCTGATTCCCACCAAGTCTCTTCAAACACAACGGGAAACTTGTCTATGAAACGAGCACTACCATCAGAGTTTTGGAATGAAACAGGGTCTCCAGGTTCATCTTCTTCAAACAAACGATTCCATTCTGATCTTAATACTGGAAGCAACACTGTTGAGGAAAATAATTCATTTGTTTCTTTGCTTAGCCAGCTTCCACAGAGCTCAACGTTTCACCCAAATGCGCTTCTTGGCCCTGTTGGTGATGGTGTATTGAGGCAACAGTTTCAACTTCCAAGCATAAATTGGAACGCTTAG 1068 0.4382 MYSMDSSSGSHSQHLQLPPGFRFHPTDEELILHYLKRKADSTPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGTRPNRAATSGYWKATGIDKPIIASNGHHKVGVKKALVFYGGKPPKGIKTNWIMHEYRLVDNSLNRSLKPPSMTADPARSGKKNSLRLDDWVLCRIYKKSNNTSLPRLPLMEQDKEFSTESMQPTMSTLSMANTYQNSKPTSSRSASYGPLGLGNDDNFFDGILAADQSMQNGSDSHQVSSNTTGNLSMKRALPSEFWNETGSPGSSSSNKRFHSDLNTGSNTVEENNSFVSLLSQLPQSSTFHPNALLGPVGDGVLRQQFQLPSINWNA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00518 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 261 - -
Rops11g00518 355 FunFam NAC transcription factor 56 26 189 - -
Rops11g00518 355 MobiDBLite consensus disorder prediction 282 306 - -
Rops11g00518 355 Gene3D NAC domain 26 189 IPR036093 GO:0003677|GO:0006355
Rops11g00518 355 ProSiteProfiles NAC domain profile. 17 184 IPR003441 GO:0003677|GO:0006355
Rops11g00518 355 MobiDBLite consensus disorder prediction 284 306 - -
Rops11g00518 355 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
Rops11g00518 355 SUPERFAMILY NAC domain 11 184 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00518 Rops-Chr11 7131698 7133207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00518 5 355 NAC Transcription Factor Family AT1G61110 53.297 7.85e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops11g00518 NAM 5.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00518 - - gmx:100792372 532.332