Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00511 ATGGACACAAAAAGAGCTGCAGTGATGTTCGTTGATATAACAGGTGATGAGGAACATGTTATTACCGAACCCAAGGGGTCTATTCTAGGAAGTGCCACAGTGGAGGTTGAAGGTTGCTCCACTGCATCCCAAAATCCTGGGGTAGACCAAACTGATGACGACTCGCTGAGTTTGGATAGCTCAGAATCCACTCCCAAAAGACAACAAATGGATGATCAGGGGATGTCCATGGTGGTGGTCGATCTAGAGGAAGTGGTTGTGTTGGAATTACAATCTCGTCTTCCCCAGTCCCTGTCGATCCTCTCTAATCAAGATCGTCCATCTCTGCGGGGAGCTTCTACTGATGAACTCAAAGTCATGCTTTGGCAGAGTGCTCATGTTTCCCTTTTTTGTCATGAAAATATCGACAAAATTGCCCGACTTCTTGCCATAGAAGGTGAGCTGGAGGAAGTTAAGGCTGAAAAAGCAAAACTCGAAGATCAAAAGAAGATTTTGGACGACAAGCTGAAATCTTCTAATCAAATAATCGAGCAGCTGCGCGGGCAGATCCGATTTCTTCAACTGGATGTTGAAGAAGAGAATGATGAAAAAGAAGATGTTCTTATTGAACTTGAGGGTGAGAAAGCTACAAAGTTGGAAGTTGAGGCCCAAGCTAAATATTGGATGGGTGATGTGAAGAAAGCCAACATCGACGGTTTCAACAATGCTCTAAGGCAGATCGAGTTTTTCAACAAGGAGCTGCCAATCAATTTTGAGCACTGTCGTCCTTGGTGCTTTATTGATGACAGAGGGCTTTTGAATGAATATCGCAAAGGCTTCGCTCAAGGTTTTGATGCGATTGAGCTTGTTACGTTCTTGGTGACTATGGCGGATGAGGGATTCGATTACCCGTTACTGTTTCCGGACGACGGGGACGTTGCCGATGACGATAATCTTGTTATGGATATCGATTCCATTCTCAGCGTTCTTGATGAAGATCGCGATCCTTCAGAGAGTAGTAATGAGGATTCTTCATTGAAAAGTGTTTCACCCAGTGAATCTGGCATCCATGATAATTTTCTTCTTCAAAATGGGAATTCAGTGCTTGACTGTGAGCATGAGAACCAGGGACCTTCATCGCATACGTGCTCTCCCCCACAGGCTTTTGCTGGTTGTTACAAGGGCTCATTCTCTGTGGCTGAAAGTGATGAGATTTGTCACACAGAAAGGACAGGAGTTTCTAAATATGAGACACCTGCTTACAGTGTTGACTCAAGTTTTCCTGAGGCTTATTCAAACAATATAGCTCTTTGTGGAGATTATTTGAATCTGAGTCTGTGGAAGGATGAAAATGATAGTCAAATCAAGCATGTAGGAGATGATGTAGAATCTGAATATGCTTCACACAGCTCTATCTTTGAGAATGTTGGTGTAACTCTTGAAAATTATGGAACATTTTTGGAAGAATTTATTGCAGTTTCTGGGAAGCAGGAAAATGACTCATGCACATCTTTTGAAATGTCATTTGTGAATGCTGACGGATCCACGCATGTTGCAACTTCAACTGATTCTACCATTGGTCAAGGTTCCAATGTTCCTAGTGATTTTAGTAACTACTATCCATCTTTGACTTGTTATCAGGGTACAGATGACAGACTAGTTGTTACTAACACTTCTGGCTGTTTGCCTACTGGTGTTTGTCCTCAATTATGGAAAAATGAAGAAATGACGAGGAACATGAAGGTTGCAAAAATGGAGTTCTCTGCTGATACAGCACATGTGAGTAGTGGCACGCATTCCAGCCCTACTGATGGGATATCTTTTCAAGATAGTCAATTTATGTCAGCAGATGGTGAATATCCTTCATATTTTCCTGGTAATATTCTGTTTGAAGACAGTGCAGTGCGGCTTTCAAATTGTGCTACATATATTTCAAGTGAAGGCCAATCACGTCACATGAAAGCTGAAAGAGATGAACTAGTTATGCCTTACCATAATTCTTTTCACAGTGATGATGCTGAGTTCAATGCAGGTCAAGAGGTGAAACAATTACCTGGTATTTCCCCTACCATCGGATGTCAGAGTTATAAATTTTTGAAGCATGAGGATAGTGATACAATTGTAACAACTGACAAGGTGAATTATTATCAAGATATTATTGATGAAACTGCCAATTCATTTCCTGGAAACATGGGAAGTTTGAATTTAAAATCTATAGACAAATCTTTGTCAACCCAGGCATCAATTGCTAGTGGGAAGCAGTATAATTGTGTTCTGAGTGAAGGAGGGGGTAAACCAATCGAACATAAAAGCATTGATTCTCAACCTTCAAAAGGAAGTACTGAGAGATGCAATGTTGAGGATGACTATGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCCATAAGTCGTTCTACAGAACTTGGGAATTCCCTTAATATGTCACAATCTTCTAGATGTGGTCATACCCAACCTTATATTGTGGGAGGCGCAAGACCAAAGGCACACGATGAGCAATACATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCCACCAGATGGACTGCTGGCAGTTCCTCTTTTACGTCATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACGTCAAGTTTATACTGCTCTGGAGGAATTCTCGCAGATGATCAGGGTCTTGGGAAAACAGTATCGACTATTGCTTTAATATTAAAGGAGAGACCTCCATTGCTTAATACACACAACAATACACAAAAAAATGAATTAGAAACTTTGAATTTGGATGTGGATGATGACCTGCTTCCTGAGAATGGTGTAGTGAAGAAAGAATCTAATATGTGTCAGGATATGTCTGGTAGAAATCCAATCATGAGCATGAATTTATTGGTGCATCCAAAGGGAAGGCCATCAGCGGGAACCCTTATTGTTTGTCCGACTAGTGTCCTGCGACAATGGGCTGAGGAGTTGCATAATAAGGTAACCTGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAAAAAGGAATTTATGAAGATCATGCTGTACCAAGTAAGAAAAGGAAATACCCTCCTAGTTCTAGTAGAAATGGCAAGAAGGGATTGGACAGCACAATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAGGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCTAAGCGTAGATGGTGCTTGTCAGGGACTCCCATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGACCCTTATGCTGTGTATACTTCATTCTGTTCCACAATTAAGAGCCCTATCAACAGAAATCCATCAAAGGGGTATAGAAAGCTACAAGCTGTCTTAAAGACGATAATGTTACGTCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATTTCCTTGCCACCTAAATTTGTAGAGTTGAAAAAAGTGGATTTTTCACAGGAGGAACGTGATTTCTATTCCAGACTGGAGGCGGATTCCCGTGCACAGTTTCAGGAATATGCTGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTGTTGATGCTTCTGCGCCTTAGACAAGCTTGCGATCACCCTCTGCTTGTTAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCGGTTGAGATGGCAAAAAAGCTTCCTCAGGAAAAACAATTGTCTCTTCTAAAATGCTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGCAATGATCCTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTTCAAATTGCAAAACTCGACTAACCATGTCTTCAGTGTTTTCCAAAGCCACACTGAACAGTTCTCTATCTGACCAGGCTTGTGATCATTTGCCTGGTTGTGAGGTGGAGGAATCTGATCCTTGTTCTCAGACTCAGCCATATGATTCTTCAAAAATAAAGGCTGCACTTGAGGTGTTGCACTCATTGTCTAAACCACAATGCCATACTTCACAAAAAAATTCTGTGGAGAGCTCTTTCAGTGAAAGTACTGACTGCCTTGGGAGCTCCTCTCGTGCTGACAATGGGAAATCCTTCAATGATTTTCCTGAGAATCAAAGAGTGTTTACGGAAAAAAGCTCTAATGATTCAGTTGGTTCTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCATGTCTTAAAAATTCTTCAATTCAATATAGAAGACTTGATGGAACAATGTCAGTCATTGCAAGAGATAAAGCTGTTAAAGATTTTAACACACACCCTGAGGTATCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGCCTGAACATGGTAGCAGCTTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCTATAGATAGAGCACATCGAATTGGACAGACTCGTCCTGTTACAGTTTTGCGGTTAACTGTGAAGGATACAGTTGAAGACCGTATTTTAGCTTTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCTTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGACGATTTAAAATACTTGTTCATGATGTGA 4842 0.4164 MDTKRAAVMFVDITGDEEHVITEPKGSILGSATVEVEGCSTASQNPGVDQTDDDSLSLDSSESTPKRQQMDDQGMSMVVVDLEEVVVLELQSRLPQSLSILSNQDRPSLRGASTDELKVMLWQSAHVSLFCHENIDKIARLLAIEGELEEVKAEKAKLEDQKKILDDKLKSSNQIIEQLRGQIRFLQLDVEEENDEKEDVLIELEGEKATKLEVEAQAKYWMGDVKKANIDGFNNALRQIEFFNKELPINFEHCRPWCFIDDRGLLNEYRKGFAQGFDAIELVTFLVTMADEGFDYPLLFPDDGDVADDDNLVMDIDSILSVLDEDRDPSESSNEDSSLKSVSPSESGIHDNFLLQNGNSVLDCEHENQGPSSHTCSPPQAFAGCYKGSFSVAESDEICHTERTGVSKYETPAYSVDSSFPEAYSNNIALCGDYLNLSLWKDENDSQIKHVGDDVESEYASHSSIFENVGVTLENYGTFLEEFIAVSGKQENDSCTSFEMSFVNADGSTHVATSTDSTIGQGSNVPSDFSNYYPSLTCYQGTDDRLVVTNTSGCLPTGVCPQLWKNEEMTRNMKVAKMEFSADTAHVSSGTHSSPTDGISFQDSQFMSADGEYPSYFPGNILFEDSAVRLSNCATYISSEGQSRHMKAERDELVMPYHNSFHSDDAEFNAGQEVKQLPGISPTIGCQSYKFLKHEDSDTIVTTDKVNYYQDIIDETANSFPGNMGSLNLKSIDKSLSTQASIASGKQYNCVLSEGGGKPIEHKSIDSQPSKGSTERCNVEDDYDVCIIEDISHPAPISRSTELGNSLNMSQSSRCGHTQPYIVGGARPKAHDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNTHNNTQKNELETLNLDVDDDLLPENGVVKKESNMCQDMSGRNPIMSMNLLVHPKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKANLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGIYEDHAVPSKKRKYPPSSSRNGKKGLDSTMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKSPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFVELKKVDFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKQLSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPASNCKTRLTMSSVFSKATLNSSLSDQACDHLPGCEVEESDPCSQTQPYDSSKIKAALEVLHSLSKPQCHTSQKNSVESSFSESTDCLGSSSRADNGKSFNDFPENQRVFTEKSSNDSVGSVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVIARDKAVKDFNTHPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM* 1614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00511 1613 Coils Coil 141 210 - -
Rops11g00511 1613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1293 1351 IPR013083 -
Rops11g00511 1613 MobiDBLite consensus disorder prediction 324 346 - -
Rops11g00511 1613 Pfam Helicase conserved C-terminal domain 1457 1555 IPR001650 -
Rops11g00511 1613 SMART ring_2 1300 1338 IPR001841 -
Rops11g00511 1613 Gene3D - 1074 1185 IPR038718 -
Rops11g00511 1613 Gene3D - 950 1049 IPR038718 -
Rops11g00511 1613 CDD SF2_C_SNF 1458 1565 - -
Rops11g00511 1613 ProSiteProfiles Zinc finger RING-type profile. 1300 1339 IPR001841 -
Rops11g00511 1613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1449 1608 IPR001650 -
Rops11g00511 1613 SMART helicmild6 1472 1555 IPR001650 -
Rops11g00511 1613 MobiDBLite consensus disorder prediction 38 71 - -
Rops11g00511 1613 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 957 1043 - -
Rops11g00511 1613 Pfam SNF2-related domain 882 1261 IPR000330 GO:0005524|GO:0140658
Rops11g00511 1613 SMART ultradead3 858 1161 IPR014001 -
Rops11g00511 1613 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 675 1612 - -
Rops11g00511 1613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1192 1612 IPR027417 -
Rops11g00511 1613 Pfam Zinc finger, C3HC4 type (RING finger) 1300 1336 IPR018957 GO:0046872
Rops11g00511 1613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 877 1146 IPR014001 -
Rops11g00511 1613 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1066 1196 - -
Rops11g00511 1613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 847 1184 IPR027417 -
Rops11g00511 1613 Gene3D - 1199 1612 IPR027417 -
Rops11g00511 1613 SUPERFAMILY RING/U-box 1297 1352 - -
Rops11g00511 1613 CDD DEXDc_SHPRH-like 862 1184 - -
Rops11g00511 1613 Gene3D - 832 926 IPR038718 -
Rops11g00511 1613 ProSitePatterns Zinc finger RING-type signature. 1315 1324 IPR017907 -
Rops11g00511 1613 MobiDBLite consensus disorder prediction 1041 1074 - -
Rops11g00511 1613 MobiDBLite consensus disorder prediction 38 73 - -
Rops11g00511 1613 MobiDBLite consensus disorder prediction 1041 1059 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00511 Rops-Chr11 6976210 6992049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00511 752 1612 RAD5 or RAD16-like Gene Family AT1G61140 61.231 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops11g00511 SNF2_N 1.3e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00511 - - gmx:100805307 1955.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02014 2 31948987 31959126 Rops11g00511 11 6976210 6992049 PCT