Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00500 ATGGGGACGGAGGTGATGGGAAGGTGGGGTACATGGGAGGAGCTCCTCCTTGGTGGGGCCGTTCTCCGCCACGGGACACGAGACTGGAACGTCGTTGCCGCCGAGCTCCGAGCACGAACCCTTTGTCCTTATACTTTCACCCCTGAGGTCTGTAAAGTCAAGTATGAAGACTTGCAACAGCGGTATTCTGGGAGCACGGCTTGGTTTGAGGAGCTCAGGAAGAAAAGAGTAGCAGAGCTTAAGAGAGCTCTGGAGCTATCTAAAGATTCAATTGGGTCTCTTGAATCAAAGATTGAATTCCTCAAGGCTGGGAAAAGTGAGAAAAGAGATGACTGTCATCTTGACAATGGCTCAAGAAGTCCAGAATCACATTTACCTTCACGGAAATTGGATCGAGTTGAATCTTCCACTAAAGAGACATCGAAGGATGGGCTATCTGCTGGAAGTTTCACACACGAAACCAGGACAAACTGGTCTCCTGAATGCCGGGTCCCAGCTGGGTCTGCTGAAGATATGGAGACTAAGCCTGAAGTTTCACACTCCACTGAGCAAGTTAAAGTTTTGAATGTAGATAATTTGGCACATGCTATAATATGTAAAGGACAAGGAGGAAGTCTTAAAAAACGGAGAGGGAAGAGGAAGAGAAAGGATTGTGGCAGAAATATTAAGGAAGCAAGTGTGGGAGAAAGTGATTTATTAGATTCAACTGATGTCCTATCCTGGTGTAAAGAAAGTTCTACCAGCAACTGTGGTGAAGTTGCCAAATCTTCTGGTGTAGATGATCAAAATAGGAACTTAAAAAAGATGGGGGTGGAAGACTTGATGGAGATTTTAGATTCTATTTTGGAAACTAAAGGTGCCTCTGCCTACCGTCGGAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATTCGGCGGCACATGGACTTTGACACCATAAGGTCAAGAATTAGCGGCCAAACAATTAAGACAGCCATAGAACTTTTCCGAGACTTGCTGCTACTCACTAACAATGCATTAGTCTTCTACTCCAAGAGCACTCGTGAATATAAAACTGCTCTATTGCTAAGAGACATTGTCACCAAAAAAATGAGGGAGAGTTTAAAGGGTATTAGCAGCAAAGTGACTCAGGCTAATGATGTGTCTATGAAACTACCTGTTAATAATCCTCATGTGAAACCAAGAAGTGTACGCTTAGGTAACAGAAAAATTGTTGCAAAGGAGGTTGGTGGCAAGAACTCTGCATCTGGAGTGTCACATGCAGCTAAGAAACCTAGTAATGTTGATTCCCCTTCTTCAGTGGAATCCTTATCTGTCAAGAAGAAAGCTTTTGGTCGACCAAAAAAGGTTGGACGTGGAACTGCAGGTCAAAGGCCTGCAACACCAATGAAGGGAAAGAAAAGAGTTAGAACAAGGTGA 1425 0.4407 MGTEVMGRWGTWEELLLGGAVLRHGTRDWNVVAAELRARTLCPYTFTPEVCKVKYEDLQQRYSGSTAWFEELRKKRVAELKRALELSKDSIGSLESKIEFLKAGKSEKRDDCHLDNGSRSPESHLPSRKLDRVESSTKETSKDGLSAGSFTHETRTNWSPECRVPAGSAEDMETKPEVSHSTEQVKVLNVDNLAHAIICKGQGGSLKKRRGKRKRKDCGRNIKEASVGESDLLDSTDVLSWCKESSTSNCGEVAKSSGVDDQNRNLKKMGVEDLMEILDSILETKGASAYRRRLDSQKRGRYKKMIRRHMDFDTIRSRISGQTIKTAIELFRDLLLLTNNALVFYSKSTREYKTALLLRDIVTKKMRESLKGISSKVTQANDVSMKLPVNNPHVKPRSVRLGNRKIVAKEVGGKNSASGVSHAAKKPSNVDSPSSVESLSVKKKAFGRPKKVGRGTAGQRPATPMKGKKRVRTR* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00500 474 Coils Coil 77 97 - -
Rops11g00500 474 Gene3D - 261 374 IPR036427 GO:0005515
Rops11g00500 474 SUPERFAMILY Bromodomain 271 371 IPR036427 GO:0005515
Rops11g00500 474 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 3 433 - -
Rops11g00500 474 MobiDBLite consensus disorder prediction 140 158 - -
Rops11g00500 474 SMART bromo_6 267 371 IPR001487 GO:0005515
Rops11g00500 474 MobiDBLite consensus disorder prediction 109 139 - -
Rops11g00500 474 MobiDBLite consensus disorder prediction 421 439 - -
Rops11g00500 474 Pfam Bromodomain 275 355 IPR001487 GO:0005515
Rops11g00500 474 CDD Bromodomain 272 366 - -
Rops11g00500 474 ProSiteProfiles Bromodomain profile. 302 352 IPR001487 GO:0005515
Rops11g00500 474 MobiDBLite consensus disorder prediction 109 180 - -
Rops11g00500 474 MobiDBLite consensus disorder prediction 412 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00500 Rops-Chr11 6813446 6818920 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops11g00500 Bromodomain 5.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00500 - - gmx:100804245 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02005 2 31796203 31800840 Rops11g00500 11 6813446 6818920 PCT