Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00482 ATGGCTTCTGCTTCGTCCTCTTCTTCCTCTTCCTCTAAGTTTTGCTTCAATTCTGACTGCAAAGAATTGAAGTCTGAAAGACCTAAGAAAGGTTGGAGACTCCGTACTGGAGACCTAGCTGAGCTTTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGAGATTTTTCATGCAAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGGAAGCGGATTCATTGTGGGTGTATTGCTTCAAGTCATGCTTTTGTGTTGTTAGATCCTGGAGGAATTGAATGCTTTGCATGTGCCCGCAAAAATATTATTTTGCCATCTAACCTGCCATGGCCACAATCTTTTTCCTTTCAAAATCGTTTATCAGAGAGACTTAAAGACCTGTCTGCCAAAAGTTGGAGTCAGTTAGCTGGATCAGGTCCTGTACCGTGGAAGCAAGCACCCAGTCTGTTCAATTCAGCTTCTTCATCTGACCTGCTTCCAGATGCACCCTCTCTAGTTGAATTATCAAATAGCTTTGACAAAATCTATGGCAATGAAAGGTTACCTGCCTCATCCTTGGAAAAGAAAAACGAGGATTTGTCTGGATTATCAGTAAACTGGAGTGTCAAGCTTGGTTCACGGGACACGATACTCATGAATGGAATGAGGAATGAGGACAAATCAAGTTCGTGTTTAAATATGTGCCAACAGCCTCCTTCTCTGAAGGAAGATTCATCTCCTCAACCATTTGGTTTGTCGGTTCCTTATTCATCCCCAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAGTCATCCACAACAAACTCCACCTCCTCCAGGAAAGCAATTTAGTGGCACTATGCATTTAGCGCTTGACTCATCTGGTGAAGCTCAAGCGCGCAATGGCCGGCCTCGAGCAGATGCCCGGGGAAGAAACCAGTTACTGCCACGGTACTGGCCCAGGTGTACTGATTTGGAGCTACAGCAAATATCTATAGATTCTAATTCTGTAATTACTCCCTTGTTTCAAAAAACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCTAAAAAGTGTGCAGAGACCTACTTCCCACCAATTTCCCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAAGAATGGATATTTCAGTTTCGCTTCTGGCCGAACAATAACAGTAGAATGTATGTTTTGGAGGGTGTCACTCCATGCATACAATCCATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGCCGATTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAAGCTTCGAGTGCTATGCCATCTGATCAGGATAATGAAACTAATAAGATTGGAAATGGATTTTCTTCACATGGTGAAGTTGAATTGGCGGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCTTTAATATCTAGAAAGAGAAAGAGCAGCATATTGGGTTCAAAGAGTAAACGTCTAAAGTTTGAAAATGAGGATCTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCTTGCTCCGTCCCCCACCTAGCCATGTTCCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTGCTTGGGAAGCCAACAATTTTCACAAGTGATAATGTGGGTGAAAAGATCCAGTGGGCCCAATGTGAAGATTGTCTCAAGTGGCGCAAACTACCAGCAAGTGCACTTCTTCCATCAAAATGGACCTGTTCTGATAATTCATGGGATCCAGAAAGATCATCTTGTTCAGCTGCACAGGAGCTGACAGCGGAACAGCTTGAAAATTTGCTACCCCATTGTAATTCAGCTGTTTCCAAGAAAATGAAGGCTGCCAAGCAGGATCCTGACAATGCTGATGCTTTGGAGGGACTTGACACTCTTGCAAACCTAGCTATCCTGGGAGAGGGTGAGGCACTCCCAGCATCTTCCCAGGCCACAACTAAACATCCACGTCATAGACCTGGCTGCTCTTGCATCGTTTGCATTCAGCCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTCTGCTTAACAGTGAAGCGTCGTTTCCGTACCCTTATGCTACGGCGTGAGAAGAAGCAATCCGAAAGAGAAGCAGAGACAACACGTAAAAAGCAGCAGCAACAGCATCCTCAGCAATTACCTTCGTCTGAAATTTTGCTTGATGATGATTCCTTGCCTTGTAGTAACACAGGTGACAGTAGCCCAAACCAGAACAAGGAGGGTAATGATGGCTCTGATGATGATCCTAACCGGATAAAATCATCTGCTTCACCATTCAAAGGTCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCACCTGGTTCAGACTCTGGTGGTATGATGAAGTTGCTCCATGATGCTAGTGATAGGTATCTCAAGCAGCAGACTGTGTTGAACTCTGGTACTGGAGACTCATCAGGCAATCAGTCACAGCAGGTATTAGATGGAGTGAGGGAAGAGAAACATAGCAATGGTGTTGCCCATGGCAGTAGTAGTCATAATGCAGATAAGGAACATACCCAATCTTTGTCTATGAATGTGTGA 2655 0.4426 MASASSSSSSSSKFCFNSDCKELKSERPKKGWRLRTGDLAELCDRCGSAFEEGRFCEIFHANASGWRNCETCRKRIHCGCIASSHAFVLLDPGGIECFACARKNIILPSNLPWPQSFSFQNRLSERLKDLSAKSWSQLAGSGPVPWKQAPSLFNSASSSDLLPDAPSLVELSNSFDKIYGNERLPASSLEKKNEDLSGLSVNWSVKLGSRDTILMNGMRNEDKSSSCLNMCQQPPSLKEDSSPQPFGLSVPYSSPNERNGQIGVTGSHPQQTPPPPGKQFSGTMHLALDSSGEAQARNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAMPSDQDNETNKIGNGFSSHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSSILGSKSKRLKFENEDLIELKITWQEAQGLLRPPPSHVPSIVVIEGFEFEEYEDAPVLGKPTIFTSDNVGEKIQWAQCEDCLKWRKLPASALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPHCNSAVSKKMKAAKQDPDNADALEGLDTLANLAILGEGEALPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQQQHPQQLPSSEILLDDDSLPCSNTGDSSPNQNKEGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDASDRYLKQQTVLNSGTGDSSGNQSQQVLDGVREEKHSNGVAHGSSSHNADKEHTQSLSMNV* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00482 884 Gene3D - 571 624 - -
Rops11g00482 884 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Rops11g00482 884 MobiDBLite consensus disorder prediction 864 884 - -
Rops11g00482 884 MobiDBLite consensus disorder prediction 831 851 - -
Rops11g00482 884 SMART B3_2 339 440 IPR003340 GO:0003677
Rops11g00482 884 MobiDBLite consensus disorder prediction 721 737 - -
Rops11g00482 884 Pfam CW-type Zinc Finger 572 614 IPR011124 GO:0008270
Rops11g00482 884 Gene3D - 317 443 IPR015300 -
Rops11g00482 884 MobiDBLite consensus disorder prediction 221 284 - -
Rops11g00482 884 MobiDBLite consensus disorder prediction 720 819 - -
Rops11g00482 884 ProSiteProfiles Zinc finger CW-type profile. 567 617 IPR011124 GO:0008270
Rops11g00482 884 MobiDBLite consensus disorder prediction 831 884 - -
Rops11g00482 884 SUPERFAMILY DNA-binding pseudobarrel domain 336 439 IPR015300 -
Rops11g00482 884 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Rops11g00482 884 MobiDBLite consensus disorder prediction 221 268 - -
Rops11g00482 884 MobiDBLite consensus disorder prediction 738 773 - -
Rops11g00482 884 CDD B3_DNA 337 438 IPR003340 GO:0003677
Rops11g00482 884 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 845 - -
Rops11g00482 884 FunFam B3 domain-containing transcription repressor VAL1 317 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00482 Rops-Chr11 6615642 6628401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00482 294 725 B3 DNA Binding Superfamily AT4G32010 57.604 2.07e-163 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops11g00482 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00482 K09287 - gmx:100782114 1620.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00482 11 6615642 6628401 Rops11g00482 11 6615642 6628401 ECH