Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00473 ATGGGTGATGAACAACGAGAAGCCACCGTGGAGCTCATCTCTTCCTTGATTTCCCTCTCTCACTCGATCAGGGTCTTCGCCGGAAAATGGCAACTGATTCGGAACAAACTAGTGGAGCTTCGTTCGGGGCTAACCGCCTGCGAGAACAAATCAATCTCGGGCGTGTTCCCGGCGGTAGCGGCCACCGTGGAGGAGTGTCACGAGCTGGCACGGCGGTGCTTGGATCTATCGTACAGTGGGAAGCTCCTGATGCAGAGCGATTTGGACGTAACGTTGGGGAAGTTGGAAGGTCACGTGAAGAAGCTCTCTGAGATATGCAAGAAGGGTATTCTGACAAATGGGTATGCTGTTGTTGTTTCAAAACCTGGTCTTGGTTCTTCTAAAGATGACATGAGGTTCTACCTTAGGGACTTGCTAACTAGGATCAAGGTTGGTGATTTTTGTATGAAGAAGCAGGCTTTGATGAACCTGCATGAGGTTATTGTCCAAGATGAGAAATATGTCATGTTGATTCTTCAAGTTGCTGACTTTGTTCATGTTTTGGTGGATTTCCTTGGTTCATCAGAGACTGAGATTCAGGAGGAATCTGCCAAGGTGGTTTCTCTCATTGCAGGCTTTGATTCATGTAAAGGGGTTTTGATTGCTGCTGGTGTTATTGCTCCCTTGATTCGGGTTTTGGAATGTGGGAGTGAGTTGGGGAAGGTTGGTGCTGTTAGGTGTTTGTACAAATTGACTGAGAATTCTGAAAATGCTTGGTCTGTTTCATCGCATGGGGGTGTCACCGCCTTGTTGAAGATTTGTGATAGTGTTGATTCTAAAGGGGAATTGGTTGGTCCTGCTTGTGGAGTGTTGAGGAACCTTGTTGGTGTTGAAGAGATAAAGAGGTTTATGATTGAGGAGGGTGCGGTTTCCACGTTTATCAGGCTTGTGAGATCCAAGGATGAAGTAATTCAGGTGAGTTCCATAGATTTCATTCAAAACATTGCCTCTGGGGATGAATTGGTTAGGCAAATGGTGATTAGAGAAGGTGGGATTCGTGTTTTCTTACGTGTTTTGGATCCTAAATGGACTTGTTCATCTAAAACCAGGGAGGTGGTGATGAGGGCTATTGAAAATTTGTATTTTTCTTCATCCGGTACTGTAAGTCTTTTGATTACTTATGGCTTCGTGGATCAATTGCTATATTATGTTCGAAATGGGGAGGTGTCAATTCAAGAGTTGGCACTGAAAGTGGCAATTAGACTGTGTGGAACATCAGAAGAGGCTAAGAAAGCATTGGGTGATGCGGGCTTCATGGCAGAGCTTGTTAAGTTTCTAAATGCAAAATCATTTGAAGTTCGTGAAATGGCAGCTGAGGCACTCTCTGGCATGGTTATGGTACCAAAAAATAGAAAGAAGTTTGTTCAGGATGACCAAAATATTGCTCTTCTTCTGCAATTGCTAGGCCCAGAGGAGGGAAACTTAGGTAATAAAAAGTTCTTAATCTCTATCTTAATGTCATTAACAAGTTGCAATAGTGGGAGGAAAAAGATTGTCAGTTCTGGGTATGCCAAAAACATAGAGAGACTTGCTGAAGCTGAAGTGTCTTCTGATGCCAAGAGGCTTGTTAGGAAGCTATCCACAAACAGGTTCCGCAGAGCAATAGTTGGAGGTGGAGGGGGTAAGGAATACCCTGGGAAGCTGACTCCCTTTGTGACTGCGACATGCATAGTTGCAGCCATGGGTGGTCTCATCTTCGGCTATGATATTGGTATTTCTGGGGGTGTGACGTCCATGGATTCTTTTCTGTTGAAGTTCTTCCCGTCGGTGTACCGAAAGAAGAATCTGGACAAATCGACCAACGAGTTTTGTCAGTATGACAGCCAGTTGCTGACGATGTTCACATCCTCCCTCTACCTGGCTGCCCTCTTGTCCTCTCTGGTTGCTTCCACTGTCACCCGTCCCTTTGGTCGTAAACGCTGA 1962 0.4526 MGDEQREATVELISSLISLSHSIRVFAGKWQLIRNKLVELRSGLTACENKSISGVFPAVAATVEECHELARRCLDLSYSGKLLMQSDLDVTLGKLEGHVKKLSEICKKGILTNGYAVVVSKPGLGSSKDDMRFYLRDLLTRIKVGDFCMKKQALMNLHEVIVQDEKYVMLILQVADFVHVLVDFLGSSETEIQEESAKVVSLIAGFDSCKGVLIAAGVIAPLIRVLECGSELGKVGAVRCLYKLTENSENAWSVSSHGGVTALLKICDSVDSKGELVGPACGVLRNLVGVEEIKRFMIEEGAVSTFIRLVRSKDEVIQVSSIDFIQNIASGDELVRQMVIREGGIRVFLRVLDPKWTCSSKTREVVMRAIENLYFSSSGTVSLLITYGFVDQLLYYVRNGEVSIQELALKVAIRLCGTSEEAKKALGDAGFMAELVKFLNAKSFEVREMAAEALSGMVMVPKNRKKFVQDDQNIALLLQLLGPEEGNLGNKKFLISILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSTNRFRRAIVGGGGGKEYPGKLTPFVTATCIVAAMGGLIFGYDIGISGGVTSMDSFLLKFFPSVYRKKNLDKSTNEFCQYDSQLLTMFTSSLYLAALLSSLVASTVTRPFGRKR* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00473 653 Gene3D MFS general substrate transporter like domains 560 653 IPR036259 -
Rops11g00473 653 SMART arm_5 247 289 IPR000225 GO:0005515
Rops11g00473 653 SMART arm_5 419 459 IPR000225 GO:0005515
Rops11g00473 653 SMART arm_5 290 330 IPR000225 GO:0005515
Rops11g00473 653 SMART arm_5 332 375 IPR000225 GO:0005515
Rops11g00473 653 SMART arm_5 206 246 IPR000225 GO:0005515
Rops11g00473 653 SMART arm_5 164 205 IPR000225 GO:0005515
Rops11g00473 653 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 258 302 IPR000225 GO:0005515
Rops11g00473 653 ProSiteProfiles Major facilitator superfamily (MFS) profile. 568 653 IPR020846 GO:0022857
Rops11g00473 653 SUPERFAMILY ARM repeat 137 535 IPR016024 -
Rops11g00473 653 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 301 344 IPR000225 GO:0005515
Rops11g00473 653 Gene3D - 135 543 IPR011989 -
Rops11g00473 653 Pfam Sugar (and other) transporter 569 652 IPR005828 GO:0016020|GO:0022857|GO:0055085
Rops11g00473 653 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00473 Rops-Chr11 6368631 6374645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00473 551 652 Organic Solute Cotransporters AT1G11260 80.392 4.98e-47 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00473 - - gmx:100783537 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01977 2 31300700 31302851 Rops11g00473 11 6368631 6374645 PCT