Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00468 ATGGGGAGAACACCTTGTTGTGAAAAGAATGGCCTCAAGAAAGGGCCATGGACAACTGAGGAGGATCAGAAACTCATGGATTACATTCAGAAAAATGGATATGGGAACTGGAGGACACTTCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTCCGATGGACAAACTATCTCCGACCAGATATAAAGAGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTACAATTGCATCTCGGTTACCAGGAAGAACTGACAATGAAATCAAGAATTATTGGAACACCCACATTAGAAAAAGGCTTCTGAGGATGGGAATTGATCCTGTGACACATAGTCCACGACTTGACCTATTGGACCTCTCTTCCATTCTATGCTCATCTCTCTATGGTTCATCACAAATGAACATCCAAAGGCTCCTTGGCATGCAGCCTTTGGTGAACCATGAGCTTCTAAAGTTGGCTTCCTCACTTGTTCCCTCACAGCAACATGAAGACTTTGATTTATGTGCTCAAAATGGTCAACAAAACCAGCTCTCAAATCCTCAAATCCAGAGTCAAATTCCACGTTTTGTCCAATTTCAATACCAAGTTCAAGAAGTTCCTGCAGCTGCAACAGCTTGTACCACATTCAACACCCCTTGTGTTTCACTGCCTCTAACTCAATCACAAACAATTGAACCCAATGTAGACCAATATCCATCAAGTTTCACCGACTTAAGTTACCAACAACATTCTCAACTAAGTGATTGGCGCCAAAGTGGAATTGCTCTAACAGATGACTATAACCCTCAATTATCTAGCTATAATTATTATAGTTCTGATAATCAAAATCTCATGTATCCTCCATTATCCGAAACTTCAACCTTCCATTCCAATAACAGCAACCAGAACTTCAGCTTCACTTCAGTTCTATCGACACCATCATCTAGCCCCACACCATTGAATTCAAACTCCACGTATATCAATGGGAGCAACACAGAAGATGAGAGAGAAAGCTATGACAGTTGTAACATGTTGAAATTTGAAATCCCAGATATTTTAGATGTGAATGAGTTCATGTAA 1107 0.4074 MGRTPCCEKNGLKKGPWTTEEDQKLMDYIQKNGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSTIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILCSSLYGSSQMNIQRLLGMQPLVNHELLKLASSLVPSQQHEDFDLCAQNGQQNQLSNPQIQSQIPRFVQFQYQVQEVPAAATACTTFNTPCVSLPLTQSQTIEPNVDQYPSSFTDLSYQQHSQLSDWRQSGIALTDDYNPQLSSYNYYSSDNQNLMYPPLSETSTFHSNNSNQNFSFTSVLSTPSSSPTPLNSNSTYINGSNTEDERESYDSCNMLKFEIPDILDVNEFM* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00468 368 CDD SANT 69 112 IPR001005 -
Rops11g00468 368 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops11g00468 368 CDD SANT 16 61 IPR001005 -
Rops11g00468 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 296 - -
Rops11g00468 368 SMART sant 66 114 IPR001005 -
Rops11g00468 368 SMART sant 13 63 IPR001005 -
Rops11g00468 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops11g00468 368 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops11g00468 368 MobiDBLite consensus disorder prediction 317 346 - -
Rops11g00468 368 MobiDBLite consensus disorder prediction 317 341 - -
Rops11g00468 368 FunFam MYB-related transcription factor 13 66 - -
Rops11g00468 368 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops11g00468 368 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops11g00468 368 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops11g00468 368 Gene3D - 13 66 - -
Rops11g00468 368 Gene3D - 69 116 - -
Rops11g00468 368 FunFam Transcription factor MYB39 69 130 - -
Rops11g00468 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00468 Rops-Chr11 6316445 6318032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00468 1 368 MYB Transcription Factor Family AT4G21440 54.569 6.55e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g00468 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00468 K09422 - gmx:102660551 546.969