Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00465 ATGGGAAGAAAATCAACAACGGTGGAGGAGGAAAAAGAAGAAGCCCTGCCGGACCATCTCCGGTGCAGCCGCACCGACGGACGGCAATGGCGTTGCCGGCGGAGAGTGATGGAAAACTTGAAGCTTTGCGAGATTCACTATCTGCAAGGCCGGCATAGGCAGAACAAGGAGAAGGTTCCAGAGTCACTGAAGCTTCAGAGGAAGAGAAAGGAAGAGGAGAAGCAAAACGACATCGTCGAGATCAGGCCAAAGAAGAAGAAGCAGGGTGATATACAATTGGAGCTTATAAGGATGGTTCTCCAAAGAGAGGTTGAGAAGAAGAAGAACAAGAAAATGAAGATGAAGGAGGAATGGCATTACAGTGAGGGAGAGTTGAGAAGAGAATTGACTAATGGGGTTATGGAAATTGCTCCTCCTTCGACTTCTCATGATTACACCAATGTGGGTTCTCACTGTGATGTTAAAGCTGTTACACCACGTTACTTCAGGTCCAAGAATGTTGAGAGGGTCCCTGTTGACAAGTTAAAGGTTGTGTCATATGGACGAAACTTGAAGAAGGGTAGGAGGAGGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGGAATCTTGTTAAATGTTCAAGCTGCCAGAAAGAGTTTTTCTGCATGGATTGCATTAGAGAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGTCGAGGAACATGCACCTGTAAAGATTGCCTGGCAAGTCAATACAAAGACAGTGAAAGTAAGGAATATTTGGCTGGTACAAGCAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCAGTACTAAAACAAATAAGTAAACACCAGCATACAGAGCTAGAAACAGAAGCGAAAATTAAAGGGAAAAAAATTTCTGATATTCTCATCAAGCAGGTCGAATTTGGCTGCAATGAGAAAAATTACTGCCATCACTGCAAAACACCCATTTTGGATCTTCACAGAAACTGCCTTGGTTGTTCCCACAGCCTTTGCTTAAGTTGTTGTCAGGCATTAAGTCAAGGAAGCACCTCTGAAGAAATCAACTCTTCTATGTCTAAGCTATCCCACAAAATGAACGCTTGCTTTGCTAGTGAAAGCCACCTTTTGGATGATAAGGCCATTTCTAATGGCAATTTAACTGATACTTCAATGTTACCTGAGGGGATGAGTTGTGATGGTAATGACAGTACATCATGCCCTCCTACAGAGCTAGGTGGTTGTGGTGATAGCCACCTTGATTTGAGATGTGTTTTTCCTTTAAGTTGGATCAAAGAAATGGAAGTGAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTATGGATAAAAGTTCAAGTTGCTCACTGTGTATTGACAAAGATCATAAAACTAACGGATATAAGCAATTGCAAGAAGCAGCTCAAAGAGAAGATTCTAATGATAATTGCTTGTTTTATCCTACAGTTTTGGACATCAGTAGTGACCATTTTGAACACTTTCAGAAACACTGGGGAAAAGGCCATCCTGTACTAGTGCGAGATGTGCTCGAAAGTACACCAAACCTCAGTTGGGATCCACTGGTCATGTTCTGTGCTTATCTTGAGAGGAGCATTACAAGATATGAGAATGATAAGGACTTACTTGAAGCTTGCTTGGATTGGTGTGAGGTGGAAATTGACATTAGACAGTATTTTACTGGGTCTCTTAAATGTCAACCTCGGAAAAATACTTGGCATGAGAGGCTGAAACTAAAGGGATGGTTGTCTTCCCAGCTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTGTTTGATGCTCTTCCACTTCAAGAATACATGAATCCCGTGTCTGGTCTCCTGAATTTAGCTGCACATTCACCACAGGGGAGTACAAAACATGACATGGGACCATATGTCTATATTTCGTATGGCTGTGCTGACAAAGAAGCTTATTCCGTGACAAATCTCTGTTATGACTCATATGATGCGGTTAATATGATGGCACATACCACAGATGTCCCTCTCTCTACGGACCAGCTTACGAAAATAACCAAGTTATTGAAAAAGCACAGAGCTCTATGTCAAAGGGAGTCTTCTAAAATTACTACTGAGCATGTAGAAGACAGGGAACGAAAGGAACTGCAGAGTATTGTTAGAGAAGGAGCTGACTTTTTCAGGAGAGTCAACAGAACATCTTGCATCTCTTCTGAAGCCAAAACAAAAGCTAGTCAGAGTTTAGACTCCAATACTTCCGGTGATGGAGAATGTGATTCTGGTTCTGATACTGAAAAAGCACAAAGCTCTTTACCTTTCCAAAGGAAAGTTCAAAACACTGAAATGTCTCCAGATCATAATCCTAAAAATCCCTTTGAAAACTCAAACAGTAATAAAAGGAACAGGTTTACTGAGAATTCTGGTGCCCAGTGGGATGTCTTCCGAAGACAGGATGTACCAAAGCTCCTAGAATACCTTAAAAGACATTCTGATGAATTTTCTCAAACCAATGAATATCACGAAAAGGTGGTTCATCCAATTCTAGACCAGAGCTTCTTTCTTGACAATACTCACAAAATGAGACTTAAGAAGGAGTTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATTAGAAATCCTAAGTGTTGTGTTAATGTGGTATTGGAATTTGTGTCCCCTGAGAATGTTACTGAGTGTATCCAATTGATTGATGAGGTCCATCCTCTTCCAAAAGACCACAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAGATGGCCCTTTATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACATCCAAAACATGA 2901 0.4109 MGRKSTTVEEEKEEALPDHLRCSRTDGRQWRCRRRVMENLKLCEIHYLQGRHRQNKEKVPESLKLQRKRKEEEKQNDIVEIRPKKKKQGDIQLELIRMVLQREVEKKKNKKMKMKEEWHYSEGELRRELTNGVMEIAPPSTSHDYTNVGSHCDVKAVTPRYFRSKNVERVPVDKLKVVSYGRNLKKGRRRKCHWCQRSDSWNLVKCSSCQKEFFCMDCIRERYFDTQNEVKMACPVCRGTCTCKDCLASQYKDSESKEYLAGTSRVDRILHFHYLVCMLLPVLKQISKHQHTELETEAKIKGKKISDILIKQVEFGCNEKNYCHHCKTPILDLHRNCLGCSHSLCLSCCQALSQGSTSEEINSSMSKLSHKMNACFASESHLLDDKAISNGNLTDTSMLPEGMSCDGNDSTSCPPTELGGCGDSHLDLRCVFPLSWIKEMEVKAEEIVCSYDFPETMDKSSSCSLCIDKDHKTNGYKQLQEAAQREDSNDNCLFYPTVLDISSDHFEHFQKHWGKGHPVLVRDVLESTPNLSWDPLVMFCAYLERSITRYENDKDLLEACLDWCEVEIDIRQYFTGSLKCQPRKNTWHERLKLKGWLSSQLFKEQFPAHFAEVFDALPLQEYMNPVSGLLNLAAHSPQGSTKHDMGPYVYISYGCADKEAYSVTNLCYDSYDAVNMMAHTTDVPLSTDQLTKITKLLKKHRALCQRESSKITTEHVEDRERKELQSIVREGADFFRRVNRTSCISSEAKTKASQSLDSNTSGDGECDSGSDTEKAQSSLPFQRKVQNTEMSPDHNPKNPFENSNSNKRNRFTENSGAQWDVFRRQDVPKLLEYLKRHSDEFSQTNEYHEKVVHPILDQSFFLDNTHKMRLKKEFKIEPWTFEQHVGEAVIIPAGCPYQIRNPKCCVNVVLEFVSPENVTECIQLIDEVHPLPKDHKAKVDKLEVKKMALYSMSTAIKEIRELTSKT* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00465 966 Gene3D Cupin 497 938 - -
Rops11g00465 966 Coils Coil 97 117 - -
Rops11g00465 966 ProSiteProfiles Zinc finger RING-type profile. 192 238 IPR001841 -
Rops11g00465 966 ProSiteProfiles JmjC domain profile. 625 929 IPR003347 -
Rops11g00465 966 Pfam JmjC domain, hydroxylase 815 912 IPR003347 -
Rops11g00465 966 SMART cupin_9 606 929 IPR003347 -
Rops11g00465 966 MobiDBLite consensus disorder prediction 746 814 - -
Rops11g00465 966 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Rops11g00465 966 SUPERFAMILY Clavaminate synthase-like 505 949 - -
Rops11g00465 966 MobiDBLite consensus disorder prediction 53 75 - -
Rops11g00465 966 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 965 IPR045109 GO:0032454|GO:0033169
Rops11g00465 966 Pfam WRC 17 58 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00465 Rops-Chr11 6265566 6271260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00465 17 56 GRF Transcription Factor Family AT2G22840 50.000 2.64e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops11g00465 JmjC 9.5e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00465 K15601 - gmx:100802129 1458.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01968 2 31137287 31143350 Rops11g00465 11 6265566 6271260 PCT