Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00452 ATGATGGTAGTCATCAACCATGCAAGTTTGTTATCAATTTTAATCATATTTTGTTGCCTATGTTTAGATTTTGGTACTGCCACACACACCATCACTTCATCTCAATACATCAAAGACCCTGAAACTCTAAGCTCCAATAATAGTAAGTTCACTTTAGGATTTTTCAGCCATGACAATTCTGCGGATCGCTACGTGGGCATATGGCACATGTCCAAATCCACTGTTGTATGGGTAGCTAACAGAAACCAACCACTCAGGGATTCTTCAGGGAGTTTTACAATATCCAACGATGGAAATCTTGTGGTTTTGAATGGAACAAAACAGGTGATTTGGTCGTCAAATGTAACCAATATTGCAACTAATTCCAGTTCCCAACTTTTAGATTCTGGGAACCTTGTCCTCCTGGATAGTACAGGAAAGACAATATGGGAGAGTTTTAACCATCCTACAGATACTTTGCTGCCAAACATGAAAATTACAAGCAACAGAAGAACAGGTGAGAAAGTTCAGATGACATCATGGAAAAGCCCTTCTGATCCATCCATTGGAAACTTCTCTCTAAGTTTTGGACCCCTTAGTATTCCAGAAGGGTTCATTTGGAAGGAAACACGCCCATACTGGCGCACTGGTCCATGGAATGGTCAGGGAATATTTGAGCGAAAAGACTGGGATGATGAGAAGAAGGAATGGCAATTTGAGTGGAAATCTCAAACCTCTGATTGTGATGTTTATGGTAAATGTGGGGCATTTGGGATCTGTAGCTCAGAGAGTTCACCAATATGCAGCTGTTTGGGAGGGTTTGAACCAAGTAATAGAGAAGAATGGAATAGACAAAACTGGACTAATGGATGTGTAAGGAGAACAGCTCTGCAGTGTGAAAGTGCCAAAAGTCAAAATGGGAGCAAAACGGATGATGGATTTCAGAGACTGCAGATGATAAAAGTTCCGGACTTTGTGGAGTGGTCATGGGTTAAAAATGAAGACACATGCAGAAACCAGTGCTTGGAGAACTGCACTTGCATTGCGTATTCGTATGATGCTGGGATTGGTTGTATGTCATGGAGTGGAAATCTCATTGACATACAACAATTTACAAGTGGGGCCAATGACCTATATATTCGTCTAGCCAATTCAGACCTTGGTATCAATGATAAAAAGAGAGATGTCACAGCCATCATCACTATTACAGTAATAGTAGGAATGGTCATAGTTGTCACCTGTACATATTTCTTCTGGAAACACTTGGCTAGAAAAAGGAAGAGAGAATGGTTATCTCGGTTCAATAGAGGTGAAGCACCAGCTGCAAATAGAAGTGACAGTGGAGAACTGTCAGGAGTTGAACTGCAGGAGCTATTACTATTTGACGCGGAAAAGCTTGCAATTGCCACAAACAACTTCCACTCATCCAACAAACTCGGGCAGGGTGGTTTTGGTCCAGTATACAAGGGGAAACTAAAAGACGGCCAGGAAATAGCAGTCAAAAGACTTTCTAGAGCATCTGGACAAGGATTAGAAGAATTCATGAATGAGGTAGTGGTGATTTCTAAGCTTCAACATCGCAATCTAGTAAGACTTCTTGGCTGCTGCAGAGAAGGAGATGAAAAGATGTTAATCTATGAGTACATGCCAAATAAAAGTTTGGACTCATTTGTCTTCGATCCACCTGAGCATAAATTCTTAGATTGGATAAAACGCTTTAGCATGATAGAAGGAATAGCTAGAGGTTTGCTTTATCTTCACAGAGATTCTAGGCTAAAAATCATTCACAGAGATTTGAAAGCAAGTAATATCTTGCTTGATGAGGAGCTAAATCCAAAAATATCAGACTTTGGTTTGGCCAGAATATTTGGAGGGCGTGGAGATCAAGCTAACACTGGAAGGGTTGTTGGAACATATGAAATTGTGAATCTTCCTCCACCAAGGCAGCCTGCATTCATCATGAGGCAGAATATGTTAAACTCATCGTCCTCTGAAGATTTTCATAAACTGCTTTCAAACAACAGTGTCACTATTACATGTATCCAAGGCAGATAA 2034 0.4056 MMVVINHASLLSILIIFCCLCLDFGTATHTITSSQYIKDPETLSSNNSKFTLGFFSHDNSADRYVGIWHMSKSTVVWVANRNQPLRDSSGSFTISNDGNLVVLNGTKQVIWSSNVTNIATNSSSQLLDSGNLVLLDSTGKTIWESFNHPTDTLLPNMKITSNRRTGEKVQMTSWKSPSDPSIGNFSLSFGPLSIPEGFIWKETRPYWRTGPWNGQGIFERKDWDDEKKEWQFEWKSQTSDCDVYGKCGAFGICSSESSPICSCLGGFEPSNREEWNRQNWTNGCVRRTALQCESAKSQNGSKTDDGFQRLQMIKVPDFVEWSWVKNEDTCRNQCLENCTCIAYSYDAGIGCMSWSGNLIDIQQFTSGANDLYIRLANSDLGINDKKRDVTAIITITVIVGMVIVVTCTYFFWKHLARKRKREWLSRFNRGEAPAANRSDSGELSGVELQELLLFDAEKLAIATNNFHSSNKLGQGGFGPVYKGKLKDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLLGCCREGDEKMLIYEYMPNKSLDSFVFDPPEHKFLDWIKRFSMIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGLARIFGGRGDQANTGRVVGTYEIVNLPPPRQPAFIMRQNMLNSSSSEDFHKLLSNNSVTITCIQGR* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00452 677 Gene3D Transferase(Phosphotransferase) domain 1 542 650 - -
Rops11g00452 677 Pfam Protein kinase domain 466 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00452 677 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Rops11g00452 677 CDD B_lectin 34 149 IPR001480 -
Rops11g00452 677 SMART serkin_6 466 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00452 677 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 146 - -
Rops11g00452 677 SUPERFAMILY Protein kinase-like (PK-like) 447 632 IPR011009 -
Rops11g00452 677 Pfam PAN-like domain 302 361 IPR003609 -
Rops11g00452 677 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 180 IPR036426 -
Rops11g00452 677 Gene3D Phosphorylase Kinase; domain 1 432 541 - -
Rops11g00452 677 SMART ntp_6 302 375 IPR003609 -
Rops11g00452 677 Pfam D-mannose binding lectin 74 175 IPR001480 -
Rops11g00452 677 Pfam Domain of unknown function (DUF3403) 633 677 IPR021820 GO:0004674
Rops11g00452 677 ProSiteProfiles Protein kinase domain profile. 466 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00452 677 ProSiteProfiles PAN/Apple domain profile. 292 376 IPR003609 -
Rops11g00452 677 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 542 633 - -
Rops11g00452 677 SMART blect_4 34 149 IPR001480 -
Rops11g00452 677 Gene3D - 24 147 IPR036426 -
Rops11g00452 677 Pfam S-locus glycoprotein domain 215 270 IPR000858 GO:0048544
Rops11g00452 677 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 433 541 - -
Rops11g00452 677 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 216 628 - -
Rops11g00452 677 CDD PAN_AP_plant 288 376 - -
Rops11g00452 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00452 Rops-Chr11 6112514 6115625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00452 376 632 Receptor kinase-like Gene Family AT4G23190 50.195 2.76e-79 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops11g00452 Pkinase 4.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00452 - - gmx:100779455 790.415