Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00446 ATGATGGTAGTCATCAACCATGCAAGTTTGTTATCAATTTTAATCATATTTTGTTGCCTATGTTTAGATTTTGGTACTGCCACACACACCATCACTTTATCTCAATACATCAAAGACCCTGAAACTCTAAGCTCCAATAATAGTAAGTTCACTTTAGGAATTTTCAGCCCTGACAATTCTGCGGATCGCTACGTGGGCATATGGTACATGTCCAAATCCACTGTTGTATGGGTAGCTAACAGAAACCAACCACTCAGGGATTCTTCAGGGAGTTTTACAATATCCAATGATGGCAATCTTGTAGTTTTGAATGGAAAAAAACTGGTGATGTGGTCATCAAATGTGTCCAATATTGCAACTAATTCCAGTTCCCAACTTTTAGATTCTGGGAACCTTGTCCTCCTGGATAGTACAGGAAAGAAAATATGGGAGAGTTTTCAGCATCCTACAGATACTTGGCTGCCAAAAATGAAAATTACAAGCAACAGAAGAACGGGTGAGAAAGTTCAGATTACATCATGGAATAGCCCTTCTGATCCATCCATTGGAAACTTCTCTCTAAGTTTTGGACCCCTTAGTATTCCAGAAGGGTTCATTTGGAAGGAAACTCGCCCATACTGGCGCACTGGTCCATGGAATGGTCAGGTCTTTATAGGGATACCTGAGATGAGTTCTTCATATCTTAATGGATTCAACGTAGGTGATGAAGGGGATGACACTTTTTATCTCACTTATTCTTATGTAAATGAATCTCTTTTAGCAGTGTTTGTCTTGAACTGGCAGGGAATATTTGAGCGAAAAGGCTGGGATGATGAGAAGAAGGAATGGCAAGTTGAGTGGAAATCTCAAACCTCTGATTGTGATGTTTATGGTAAATGTGGGGCATTTGGGATCTGTAGTTCAGAGAGTTCACCAATATGCAGCTGTTTGGGAGGGTTTGAACCAAGTAATAGAGAAGAATGGAATAGACAAAACTGGACTAATGGATGTGTAAGGAGAACAGCTCTGCAGTGTGAAAGTGCCAAAAGTCAAAATGGGAGCAAAACGGATGATGGATTTCGGAAACTGCATATGATAAAAGTTCCGTACTTTGTGGAGTGGGCATGGGTTAAAAATGAAGACACATGCAGAAACCAGTGCTTGGAGAACTGCACTTGCACTGCGTATTCGTATGATGCTGGGATTGGTTGTATGTCATGGAGTGGAAATCTCATTGACATACAACATTTTACAACTGGGGCCAATGACCTATATATTCGTCTAGCCAATTCAGACCTTGGTATCAATGATAAAAAGAGAGATGTCACAGCCATCATCACTATTACAGTAATTGTAGGAATGGTCATAATTGTCGCCTGTACATATTTCTTCTGGAAACACTTGGCTAGAAAAAGGAAGAGAGAATGGTTCTCTCGGTTCAATAGAGGTGAAGCACCACCAGGTGGAAATAGAAGTGACAGTGGAGAACTGTCAAGAGTTGAACTCCATGAGCTATTACTATTTGATGCGGAAAAGCTTGCAATTGCCACAAACAACTTCCAGTCATCCAACAAACTCGGGCAGGGTGGTTTTGGTCCAGTATACAAGGGGAAACTTAAAGACGGCCAGGAAATAGCAGTCAAAAGACTTTCTAGAGCATCTGGACAAGGATTAGAAGAATTCATGAATGAGGTAGTGGTGATTTCTAAGCTTCAACATCGCAATCTAGTAAGACTTCTTGGCTGCTGCAGAGAAGGAGATGAAAAGATGTTAATCTATGAGTACATGCCAAATAAAAGTTTGGACTCATTTGTCTTCGATCCACCTGAGCATAAATTCTTAGATTGGATAAAACGCTTTAGCATAATAGAAGGAATAGCTCGAGGTTTGCTTTATCTTCACAGAGATTCTAGGCTAAAAATCATTCACAGAGATTTGAAAGCAAGTAATATCTTGCTTGATGAGGAGCTAAATCCAAAAATATCAGACTTTGGTTTGGCCAGAATATTTGGAGGGCGTGGAGATCAAGCTAACACTGGAAGGGTTGTTGGAACATATGGCTATATGGCGCCTGAATATGCAATGGAAGGATTGTTTTCAGAGAAATCAGATGTCTTTAGTTTCGGAGTTTTGTTACTAGAGATTGTCAGTGGAAGAAAAAACTCAAGCTTTTATAACAATGAGCAGTCTTTGAGTCTTTTAGGATTTGCGTGGAAAGTATGGAATGAAGACAATATTGTATCTCTAATAGATCCAGGAATATGTGGCCCCAACCGTGAGAAGGATATTTTGAGGTGCATACACATAGGACTTCTGTGTGTTCAAGAAAGTGCAAGAGACAGGCCCACTATGGCCTCCTTAATTTCTATGCTTAACAGTGAAATTGTGAATCTTCCTCCACCAAGGCAGCCTGCATTCATCCTGAGGCAGAATATGTTAAATTCATCGTCCTCTGAAGATAGTCGTAAACTGCTTTCAAACAACAGTGTCACTATTACACGTATCCAAGGCAGATAA 2496 0.4018 MMVVINHASLLSILIIFCCLCLDFGTATHTITLSQYIKDPETLSSNNSKFTLGIFSPDNSADRYVGIWYMSKSTVVWVANRNQPLRDSSGSFTISNDGNLVVLNGKKLVMWSSNVSNIATNSSSQLLDSGNLVLLDSTGKKIWESFQHPTDTWLPKMKITSNRRTGEKVQITSWNSPSDPSIGNFSLSFGPLSIPEGFIWKETRPYWRTGPWNGQVFIGIPEMSSSYLNGFNVGDEGDDTFYLTYSYVNESLLAVFVLNWQGIFERKGWDDEKKEWQVEWKSQTSDCDVYGKCGAFGICSSESSPICSCLGGFEPSNREEWNRQNWTNGCVRRTALQCESAKSQNGSKTDDGFRKLHMIKVPYFVEWAWVKNEDTCRNQCLENCTCTAYSYDAGIGCMSWSGNLIDIQHFTTGANDLYIRLANSDLGINDKKRDVTAIITITVIVGMVIIVACTYFFWKHLARKRKREWFSRFNRGEAPPGGNRSDSGELSRVELHELLLFDAEKLAIATNNFQSSNKLGQGGFGPVYKGKLKDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLLGCCREGDEKMLIYEYMPNKSLDSFVFDPPEHKFLDWIKRFSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGLARIFGGRGDQANTGRVVGTYGYMAPEYAMEGLFSEKSDVFSFGVLLLEIVSGRKNSSFYNNEQSLSLLGFAWKVWNEDNIVSLIDPGICGPNREKDILRCIHIGLLCVQESARDRPTMASLISMLNSEIVNLPPPRQPAFILRQNMLNSSSSEDSRKLLSNNSVTITRIQGR* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00446 831 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Rops11g00446 831 Pfam PAN-like domain 348 407 IPR003609 -
Rops11g00446 831 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Rops11g00446 831 CDD STKc_IRAK 519 785 - -
Rops11g00446 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Rops11g00446 831 SMART blect_4 34 149 IPR001480 -
Rops11g00446 831 ProSiteProfiles PAN/Apple domain profile. 338 422 IPR003609 -
Rops11g00446 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 146 - -
Rops11g00446 831 Pfam D-mannose binding lectin 74 174 IPR001480 -
Rops11g00446 831 SUPERFAMILY Protein kinase-like (PK-like) 498 820 IPR011009 -
Rops11g00446 831 CDD B_lectin 34 149 IPR001480 -
Rops11g00446 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Rops11g00446 831 Pfam Protein tyrosine and serine/threonine kinase 515 784 IPR001245 GO:0004672|GO:0006468
Rops11g00446 831 Gene3D Phosphorylase Kinase; domain 1 483 588 - -
Rops11g00446 831 ProSiteProfiles Protein kinase domain profile. 513 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00446 831 SMART serkin_6 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00446 831 Gene3D Transferase(Phosphotransferase) domain 1 589 790 - -
Rops11g00446 831 CDD PAN_AP_plant 334 422 - -
Rops11g00446 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 792 - -
Rops11g00446 831 Gene3D - 24 147 IPR036426 -
Rops11g00446 831 SMART ntp_6 348 421 IPR003609 -
Rops11g00446 831 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 774 - -
Rops11g00446 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 482 588 - -
Rops11g00446 831 PIRSF SRK 1 831 IPR024171 GO:0004674
Rops11g00446 831 Pfam Domain of unknown function (DUF3403) 786 831 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00446 Rops-Chr11 6032836 6037992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00446 435 831 Receptor kinase-like Gene Family AT4G21410 50.995 7.51e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops11g00446 PK_Tyr_Ser-Thr 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00446 - - pcin:129286414 1036.17