Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00428 ATGGCGAGTCAACTTCCGGAGCACTTCAAGTGTCCGATTTCGTTGGAAATAATGTCCGACCCGGTTATCCTCTCATCGGGTCACACCTTCGACCGTTCTTCTATCCAACGCTGGTTAGACGCCGGTCACCGCACGTGTCCAATTACTAAATTGCCCCTTCCCGAATACGTTTCTCTCATCCCCAACCATGCTTTCCGAAGCTTAATTTCCAACTATGCCCCTATTTCCCCTCTCCACCACCCTCCACCGCCACAACCCCAAACCCTAATCTCCATCCTCACCTCTCCCTCTTCCTCCGTCAACTCCAAATTCGAATCCCTCCGACAACTCACGCGCCTCTCCAACCACGACTCCCTCTTCCGCCGCCGCCTCTCCGACTCCGCCGTCGTCCCCGCCCTCCTCGCCTGCGTCGACTCCTCCGATAACTCCCTCCGTGAGAAAGCACTCTCTCTCCTCCTCAACCTCAGCCTCGACGACGACAACAAGGTCGGACTCGTCGCCGAGGGAGTCGTCGGCCGCGTCGTCGCTGCCCTCTCCGCCGGCTCCTCCGATTGTCGTGCGGTGGCGGCGACTCTACTGACCAGTTTGGCCGTGGTGGAGGTAAACAAAGCCACGATCGGTGCGTACCCTCACGCGATTGAAGCTCTTGTTTCCCTCGTTCGTGACGGTGAAGGGAGGAGAGAGAAGAAAGAAGCTGCTACTGCTTTATACGCTATCTGTTCTTTCGCTGATAATCGGAGAAGAGCAGTGAAATGTGGTGCCGTACCTGTTTTGCTTCGAAGTGCAGATTCTGGGCTTGAACGGAGTGTTGAAGTTCTTGGGGTTTTGGCAAAGTGTAAGGAAGGGAGGGAACAAATGGAAAGGTTTAATGGGTGTGTGCAGATTCTGGCTCGTGTGTTGAGTAATGGAACCTCAAGGGGGGTTCAGTATGCTCTGTTGGCTCTCAATTCCATCTGTTGTAACAGTGAATCCACTCTTCTTGAGGCCCTGCGAGTTGGGGTTTTGGAAATTTGTCTTGGGTTGTTGCATGATGATAATGAGAAAGTGAGAAGGAATTCCTCATGTTTGATTCAAGTTCTGCGTCGGATAAGTTGA 1095 0.5333 MASQLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPEYVSLIPNHAFRSLISNYAPISPLHHPPPPQPQTLISILTSPSSSVNSKFESLRQLTRLSNHDSLFRRRLSDSAVVPALLACVDSSDNSLREKALSLLLNLSLDDDNKVGLVAEGVVGRVVAALSAGSSDCRAVAATLLTSLAVVEVNKATIGAYPHAIEALVSLVRDGEGRREKKEAATALYAICSFADNRRRAVKCGAVPVLLRSADSGLERSVEVLGVLAKCKEGREQMERFNGCVQILARVLSNGTSRGVQYALLALNSICCNSESTLLEALRVGVLEICLGLLHDDNEKVRRNSSCLIQVLRRIS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00428 364 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Rops11g00428 364 CDD RING-Ubox_PUB 6 53 IPR045210 -
Rops11g00428 364 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Rops11g00428 364 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Rops11g00428 364 Gene3D - 86 178 IPR011989 -
Rops11g00428 364 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Rops11g00428 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Rops11g00428 364 SUPERFAMILY ARM repeat 87 360 IPR016024 -
Rops11g00428 364 PANTHER U BOX DOMAIN-CONTAINING 5 341 - -
Rops11g00428 364 Gene3D - 267 360 IPR011989 -
Rops11g00428 364 Gene3D - 179 266 IPR011989 -
Rops11g00428 364 SUPERFAMILY RING/U-box 4 73 - -
Rops11g00428 364 SMART arm_5 158 198 IPR000225 GO:0005515
Rops11g00428 364 SMART arm_5 117 157 IPR000225 GO:0005515
Rops11g00428 364 SMART arm_5 321 362 IPR000225 GO:0005515
Rops11g00428 364 SMART arm_5 202 241 IPR000225 GO:0005515
Rops11g00428 364 SMART arm_5 279 320 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00428 Rops-Chr11 5781256 5782597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00428 1 360 U-box Gene Family AT4G21350 60.054 2.93e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00428 - - pcin:129286672 508.449