Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00424 ATGGCTGAGGAGTTGCAAGCTGGGATTTGTGGTGAAACTTGGTGGAATATCAATCCAACAAGAAGTGTATTCCCTCTGATGAACACATCATCAACCTGTGCTGTGGCAGCTAATGATGCAGGGAACTATAGCACTTGGCAAACTGATTTCATGGATTTGAAGGCCACAAGACCTTGTGCTGAGGAGACTAATAACTTGGTTTCTGATGGTTCACTGGGTTTTCTTGATGCTCAGAAGTTACAGCAGAGTGAATCAGCTGGTGGAACTGGTAGCATCTTGATCGATTCCTCCTTACAAATTATGGGTTTTGACCTCTCATCTTCACCTTCATCGAATTGGAATCAGTCTCTATTTAGTGGAAGGCCAGAGAGCAATTTTCATTCTGTGCTTCAAGAAGAAACAGGTATAGATTCTTGTAATAATTCACAAATCCAAAAGGAGTGGAGCCCAAAGAATTTCTCATCTGCAGGTGGAAACCATGTTTCCACCGTTGATGCTTTCAAGCCAATGAACCAAGATTTTTCCTTAGATCAGCAGAGTTTGAATTCTGTAACAAGCAGTGGTTTATCAGGTGGATTCCCAATTGGATCAGCTTCTTATGGTTACCCTTCAACTTTAATACAAAGCTTATATGATCCCAATCCTCAACCACAGCCACAGAACTCACTTTTTTCCAACCCCTCTATGTCTTATTCACCTACTGCAAGTTATGGAACATCTTCTAATGAACTTTCACCAACATGGTCTAAGGTCTCTTCCCTTATGAAACCTTCAATGCCAAAGCAACAGCTTAGTGGATTGCACTTTTCCAACAACACTCCTTTCTGGAATGCTTCAGCTGAAGCACTTAATGACATAAGAGCAGGAGTTTTTGCTTCATCACAACCACAATATCAAACACCAAATTTTGAAGAGAAAAAAGACAATTGTCCAAGTACTCTATTAAGCAAGCTCAAGAGAGAAGAATCTCCAGACGCAGCATCGAAGAAAAATTCTTCTGAGCCTTCACTCAAGAGGCCAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGAGACAGAATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACAGCATCGGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTTAGTGTTTCGACCACTCCATATATGAAAAATGGACCTCCAAATCAACACCAGCAGGGTTGTGATAATGTGAACGACTCAGAAGGGCCAAAACTAGATTTAAGAAGCCGAGGGTTATGTTTGGTACCGATTTCAAGCACATTTCCAGTGACTAATGAGACCAGTGTTGATTTCTGGACGCCAACATTTGGAGGCACACTCATCAGCAGATAG 1395 0.4179 MAEELQAGICGETWWNINPTRSVFPLMNTSSTCAVAANDAGNYSTWQTDFMDLKATRPCAEETNNLVSDGSLGFLDAQKLQQSESAGGTGSILIDSSLQIMGFDLSSSPSSNWNQSLFSGRPESNFHSVLQEETGIDSCNNSQIQKEWSPKNFSSAGGNHVSTVDAFKPMNQDFSLDQQSLNSVTSSGLSGGFPIGSASYGYPSTLIQSLYDPNPQPQPQNSLFSNPSMSYSPTASYGTSSNELSPTWSKVSSLMKPSMPKQQLSGLHFSNNTPFWNASAEALNDIRAGVFASSQPQYQTPNFEEKKDNCPSTLLSKLKREESPDAASKKNSSEPSLKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVSTTPYMKNGPPNQHQQGCDNVNDSEGPKLDLRSRGLCLVPISSTFPVTNETSVDFWTPTFGGTLISR* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00424 464 Gene3D - 352 404 IPR036638 GO:0046983
Rops11g00424 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 406 IPR036638 GO:0046983
Rops11g00424 464 MobiDBLite consensus disorder prediction 209 247 - -
Rops11g00424 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Rops11g00424 464 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 175 443 - -
Rops11g00424 464 CDD bHLH_AtbHLH_like 348 397 IPR045239 -
Rops11g00424 464 MobiDBLite consensus disorder prediction 319 337 - -
Rops11g00424 464 MobiDBLite consensus disorder prediction 319 348 - -
Rops11g00424 464 FunFam Transcription factor bHLH123 family 352 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00424 Rops-Chr11 5727739 5730702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00424 1 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 38.478 1.82e-69 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00424 - - gmx:100794682 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01943 2 30560464 30563150 Rops11g00424 11 5727739 5730702 PCT