Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00420 ATGGAGTATGAAGATGAAGATTTGCAATGTGTTACCTTCGAAGAGTTTTCTCTTACTACTGAAAATGATAGTAGCAAGGGAAGGATGAGTTTGAAGAGGAAGTATGATGATGACACAAGAGAGTACAAATCTAAGAACCTTGAGACTGAAAGGAGGAGGAGGGAGAAGCTCAGTAGCAGGCTCTTAATGCTGCGGTCTATAATGAATAAAGCAACCATTGTTGACGATGCCATTACCTACGTCAAGATGCTGCAAGGCAATGTCCAGAGTCTCAGTGAAGAGCTTCACCAAATGGAAGCAACATCAGAGGAAACAACAGAGACAAAGATAGATGAAAATGATGCTGCAGAAGATATGAAGAAATGGGGGATACAGGCAGAGATCAGAGTGGCACAAATGGATGGGAATAAACTCTGGGTCAAAATCATCATTGAGAAGAAGAAGGGAAGATTCGAAAAATTGATAGAGGCTATGGATAACTTTGGTATTGAGCTCATTGACACCAATCTTACAACCACTAAAGGAGTATTTCTGATTACAGGCTGCATACAGGGCAAGGATGATGAAAAACTTGCAGTTCATCAAACCAAGAATTTGTTGCAAGATATTATCAGTGACATATAA 624 0.399 MEYEDEDLQCVTFEEFSLTTENDSSKGRMSLKRKYDDDTREYKSKNLETERRRREKLSSRLLMLRSIMNKATIVDDAITYVKMLQGNVQSLSEELHQMEATSEETTETKIDENDAAEDMKKWGIQAEIRVAQMDGNKLWVKIIIEKKKGRFEKLIEAMDNFGIELIDTNLTTTKGVFLITGCIQGKDDEKLAVHQTKNLLQDIISDI* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00420 207 SMART finulus 47 90 IPR011598 GO:0046983
Rops11g00420 207 Coils Coil 81 108 - -
Rops11g00420 207 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 23 201 - -
Rops11g00420 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 101 IPR036638 GO:0046983
Rops11g00420 207 Gene3D - 38 110 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00420 Rops-Chr11 5697782 5698796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00420 28 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 41.237 4.55e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00420 - - gmx:100793107 283.878