Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00406 ATGCTTGAGGTTTATCTTTCTTTCAAGAGGAAACTTCAGTGCAAACCACACCCAAAACAAGTTCATGATCCAAATACAAGTAGCCATCAAAAAAGTAATCAGAGAACAAAGTCAGGTACACTTAAGCATTCAAATATCCAAGGAAGCAATAGGCACCCAAAAAAATCACCAAGTTTCAATCCAAAACCCAATGGGGGCATTGACATCTCATATCCCATAACCCATGAAATTGTTCTTGATAGCTCAAACAGTGAAATTTGTCGATGTTGTCCTTGTCCTCAAAGCAATAAAGATTCGGAAGGTTCTCATAGAACAAGAAGGCCAGCTACACCTTCAAGGACAACCCATCCTGTAGAATACAATGAAGCAAATGTGTCCTCTAACACAAGGATGTTGGTTCAGATTGATTCTGATGGTCCTTCAACATTGACATGTCAGAAATGTGGTGAGAAACTAAAAAATCTTGATGCTGTAGAAGCACACCATATCTCTAAGCATTCAGTCACTGAACTTCAAGAAGATTCATCTAGGCAGATTATAGAAACAATATGTGGAACAAGCTCGGTTAATTCTGAAAACATGTTAGGGCAGATTGATTGTATCTTAAAAGTCCAGAACATGCCAAAAACCCTTGCTTGTTTTGAGGAATATAGAGAAATGGTGAAGATCAAGGCTGACAAGCTACAAAAGAAGCACCCTCGTTGCCTTGTTGATGGAAATGAGCTTTTAAGGTTCCATGGCACAAGTATTGCATGTTCTCTTGGCATAAGTAGTTCTTATAGTCTTTGCACTCTAGACTATTGTGGTGTATGTCAAATTCTGAGGCATGGCTTCTCCACCAACAAGGAATTCCAAGGTGCATTAGGGGTTTACACTACTTCTACAAGTGGAAAAGCCTTTGATTCCATTATGCCATCAGATGAGAGACCATTTCCAAGAAAATCAGTTATGGTGTGCAGAGTAATAGCTGGGAGAGTTCATTGCCCTCTTGAAGAAATTCAAGAAGAGGTTGATTCAGGGTTTGATTCATTGGCAGAAAAAATAAGTAATCATTCAGATGTTGAGGAACTCTACGTATTAAATCCAAAAGCTCTGCTTCCTTGCTTTGTGTCCCATTCCATTTGCTATCATCGTATTCTGCGGCAATTCATTCTTCAGACGCACCCCAACGAAGCCACAGTTATTTTTTGCTTCTCTTCTCTTCAAAGGGGAAGAAGCGAAAGGAAAGCGAAGAAGGCTTCAGGTGGGGTGAAGAAGTTTGTTGCAGAAAACATGGTTCTTGACACCATTCTGTCTTCTCCTCGAATGAGGTCTCCATCATTCAGGAGACAGTTTACAAAGGATGGACTGGGTAGTTGGTCAACACTCGTCCAGAGGCATCGCTTCCTCTTATCTGCTCTTGTTCTCCTAACTGTCCTCTGTACTGTTTATCTTTATTTTGCTGTCACTTTAGGGGCCAGTGCTTCCTGTTCTGGCATGACTGGAGCACAGAAAGCTTCATGCCATATGGAGCTTGTTAAGGATTCTGTGGCCAAGGGTAAACTGAAAATCCTATGA 1557 0.4085 MLEVYLSFKRKLQCKPHPKQVHDPNTSSHQKSNQRTKSGTLKHSNIQGSNRHPKKSPSFNPKPNGGIDISYPITHEIVLDSSNSEICRCCPCPQSNKDSEGSHRTRRPATPSRTTHPVEYNEANVSSNTRMLVQIDSDGPSTLTCQKCGEKLKNLDAVEAHHISKHSVTELQEDSSRQIIETICGTSSVNSENMLGQIDCILKVQNMPKTLACFEEYREMVKIKADKLQKKHPRCLVDGNELLRFHGTSIACSLGISSSYSLCTLDYCGVCQILRHGFSTNKEFQGALGVYTTSTSGKAFDSIMPSDERPFPRKSVMVCRVIAGRVHCPLEEIQEEVDSGFDSLAEKISNHSDVEELYVLNPKALLPCFVSHSICYHRILRQFILQTHPNEATVIFCFSSLQRGRSERKAKKASGGVKKFVAENMVLDTILSSPRMRSPSFRRQFTKDGLGSWSTLVQRHRFLLSALVLLTVLCTVYLYFAVTLGASASCSGMTGAQKASCHMELVKDSVAKGKLKIL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00406 518 ProSitePatterns Zinc finger C2H2 type domain signature. 145 166 IPR013087 -
Rops11g00406 518 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 12 371 - -
Rops11g00406 518 MobiDBLite consensus disorder prediction 94 116 - -
Rops11g00406 518 Gene3D - 156 374 - -
Rops11g00406 518 SUPERFAMILY ADP-ribosylation 193 373 - -
Rops11g00406 518 MobiDBLite consensus disorder prediction 20 57 - -
Rops11g00406 518 MobiDBLite consensus disorder prediction 13 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00406 Rops-Chr11 5513487 5518286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00406 4 370 C2H2 Transcription Factor Family AT5G54630 42.921 3.46e-102 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00406 - - gmx:100792577 537.724