Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00404 ATGGCACAGAAGCAGAAGCGTCCTTCACCTCTCGACGACCCACCCACTGCTTCCTCTTCCGAATCAGAGGATGATCAACAACCTTCTTCTCAACAACAAGATGAAGAAGAAGTTGCTTCATCTGAAGAAGAAGAAGAAGCTTCATCTGAAGAAGAGCAAAAAGATCGACCTTCATCCAAAAACCCTATTCCCCCTCCCACAACAAACTCTCACCCCAAAGCTTCTTCTTCTGACGAATCTGCTACCGAATCCGATTCAGGATCTGACACTGACTCCGACTCGGGTCCACGCGCTCCCCCTAAGGTGAAACCCATCGCATCAAAGCCCATGGACCAGACCCCCAAGTCCAGGGTCCAGGCCCAACCTTCCCCCGCGCCGACCAGATCGGGAACGAAACGCGCTGTCGAGAACAACGCGCACGTGAATGACCCCAAACGGGCCAAGAAGAAGGCAAACGATGCTTCTGCTTCCGCCGCCGCCGGTGGTGGTTCCGATGAGGAGATGGAGGAGGATGGGAAGAAATCCGTTGATGATTCCAAGAAGCTGTTTCAGAGGCTATGGAGTGAGGAAGATGAGATTGCCATTCTCAAAGGTCTTGCTGAGTTCACTTCCAAAACCGGCAATGACCCGTTGAAATATGCCAATGTTTTTCATGATTTTGTGAAAAAATCGCTGCATTTTGATGCTTCCAGTAACCAACTGAAGGCGAAGATTCGGAGGTTGAAGAAGAAGTTTGAGAACCATGCAGGGAAAGGGAAGAACGGAGAGGGCCCCAATTTCTCAAAACCACACGACCAGAAAGCTTTTGAATTGTCTAAAAAGGTTTGGCCCAAGGAATCAGTAGAAATGGAAAAGGAAAAGGATAATGGGAAACCCGTTAAGACTCCCAAGAAGGAAGCTAGTAGTAGTAGAAGAGTGGCGGCTTCCGCAAAGAAATCGAAACCGGAAACGAAACCGGAAACGACGAAACCAGAACCTGAGCTTCCACCTGTGGAGTTGAAGGAATCTGAGAAGATGGAGACTGATGAAAAGTGTGATACAAGTTTGCTTTTGAGGGAGATGATTCGTTTTGAGAAGGGTGTGGGTTTGTGTGGGTTGAATGAGGATGTGGTGAAGAGGGGAGTGGAGTTAATTGGAGAGTCAAAGAGGGAAGAATTGGAGGGAAGGTGGAAGAAATTACAGGTTGCGGAGTTGGAGCTGTTTGTGAAGCGCGCACAATTGATTGAGGAACAAGCGAGGTCGATATTGGAGGCTTACAAGTCATCAAAGCATTAG 1275 0.4847 MAQKQKRPSPLDDPPTASSSESEDDQQPSSQQQDEEEVASSEEEEEASSEEEQKDRPSSKNPIPPPTTNSHPKASSSDESATESDSGSDTDSDSGPRAPPKVKPIASKPMDQTPKSRVQAQPSPAPTRSGTKRAVENNAHVNDPKRAKKKANDASASAAAGGGSDEEMEEDGKKSVDDSKKLFQRLWSEEDEIAILKGLAEFTSKTGNDPLKYANVFHDFVKKSLHFDASSNQLKAKIRRLKKKFENHAGKGKNGEGPNFSKPHDQKAFELSKKVWPKESVEMEKEKDNGKPVKTPKKEASSSRRVAASAKKSKPETKPETTKPEPELPPVELKESEKMETDEKCDTSLLLREMIRFEKGVGLCGLNEDVVKRGVELIGESKREELEGRWKKLQVAELELFVKRAQLIEEQARSILEAYKSSKH* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00404 424 MobiDBLite consensus disorder prediction 112 136 - -
Rops11g00404 424 MobiDBLite consensus disorder prediction 138 152 - -
Rops11g00404 424 Pfam Protein of unknown function, DUF573 183 276 IPR007592 GO:0006355
Rops11g00404 424 MobiDBLite consensus disorder prediction 70 93 - -
Rops11g00404 424 MobiDBLite consensus disorder prediction 28 50 - -
Rops11g00404 424 PANTHER BNAANNG10740D PROTEIN-RELATED 31 418 IPR007592 GO:0006355
Rops11g00404 424 MobiDBLite consensus disorder prediction 266 343 - -
Rops11g00404 424 MobiDBLite consensus disorder prediction 240 343 - -
Rops11g00404 424 MobiDBLite consensus disorder prediction 1 178 - -
Rops11g00404 424 Coils Coil 231 251 - -
Rops11g00404 424 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00404 Rops-Chr11 5497193 5498699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00404 6 421 GeBP Transcription Factor Family AT1G61730 30.892 7.12e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Rops11g00404 DUF573 1.5e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00404 - - gmx:100791520 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00404 11 5497193 5498699 Rops11g00404 11 5497193 5498699 ECH