Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00400 ATGGCCAATTGCAATTGGGCATTGGATTATAGTTATCTAGATGACCTTGACAACCCACCCAATTTGTCTTGGTCCTCCTCTCCTCCTCCCTCCCTCAGTGTGGAGCTAGATGATTCACATGGAAATTCGGATGGTTTCAAGGAACCTGGTTCAAGAAAACGCTTGAGGTCAGGATCAGGATCCTGCAACCCAGCACCAGGTTCCAAAGCATGTAGAGAGAAAATGCGAAGGGATCGGCTAAATGACAGATTCATGGAACTGGGTTCTATCCTGGATCCTGGAAGGCCTCTCAAAATGGACAAGGCTGTCATATTGAGTGATGCAGTTCGAGTCGTGTCTCAGTTAAGAGATGAGGCTCAAAAGCTTAGAGAGTCTTCCGAGAATCTGCAGGAGAAAATCAATGAATTGAAGGCTGAGAAAAATGAGCTTCGTGATGAGAAGCAGCGACTTAAAGCAGAGAAAGATAACCTTGAACAGAAGCTTAAAGCCTTCACCTCACAACCTAGCTTCCTGCACCCACCTGCGTTTCCTGCACCACCAGGACAAGTTGTTGGTAGCAAGTTGGTGCCTTTCATGGGCTACCCAGGTGTTTCTATGTGGCAGTTTTTACCACCTGCTGCTGTTGATACCTCTCAGGACCATGTACTCCGCCCCCCAGTTGCATAG 666 0.476 MANCNWALDYSYLDDLDNPPNLSWSSSPPPSLSVELDDSHGNSDGFKEPGSRKRLRSGSGSCNPAPGSKACREKMRRDRLNDRFMELGSILDPGRPLKMDKAVILSDAVRVVSQLRDEAQKLRESSENLQEKINELKAEKNELRDEKQRLKAEKDNLEQKLKAFTSQPSFLHPPAFPAPPGQVVGSKLVPFMGYPGVSMWQFLPPAAVDTSQDHVLRPPVA* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00400 221 CDD bHLH_AtILR3_like 69 144 - -
Rops11g00400 221 MobiDBLite consensus disorder prediction 19 38 - -
Rops11g00400 221 MobiDBLite consensus disorder prediction 19 72 - -
Rops11g00400 221 Coils Coil 105 167 - -
Rops11g00400 221 Pfam Helix-loop-helix DNA-binding domain 68 115 IPR011598 GO:0046983
Rops11g00400 221 Gene3D - 68 144 IPR036638 GO:0046983
Rops11g00400 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 135 IPR036638 GO:0046983
Rops11g00400 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 115 IPR011598 GO:0046983
Rops11g00400 221 PANTHER BHLH TRANSCRIPTION FACTOR 4 221 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Rops11g00400 221 MobiDBLite consensus disorder prediction 40 54 - -
Rops11g00400 221 SMART finulus 70 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00400 Rops-Chr11 5454962 5460815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00400 3 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 58.621 2.25e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops11g00400 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00400 - - ccaj:109814067 323.939