Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00396 ATGAAGTCTACCACAAGAAATTTGAGTGTTCTCCAGATTTTGTGGCCATTGTTCTGTCTCTTTAAGCCAGGTTATGGTGCTGAAAGTGACATCTTTTGCTTACAAACCATCAAGAATTCGTTGGATCAATTTAATCATTTATCAAGCTGGGATTTCAACAGCAACACTGAAGGTTACATATGTGGATTTATTGGTGTTGAATGCCAGAATAATATGGAAGATAGAATAATTGGTCTTTGGCTTTCTCATATGGGGTTGGAGGGCCAGTTTCCTCGTTGCATTGAAAATTTCACATGGTTGCAGAATTTGGACCTCTCAAACAACGAACTTTCTGGATATGTCCCAACTGATATATCAAGTAAGTTGCCATATCTAACCTCACTTGATCTCTCAAATAACAATTTGTATGGTGAAATTCCAAAGGGTATTGCCAACTTCTCTCACTTGGATACCCTTAGACTTGATGGCAACCAGTTAACTGGCCAAATCCCTCCAGAACTTGGGTTGCTTCCCCAGATTAGAGTTTTTAGTGTTGCTAACAATTTCTTAACAGGGCCAGTGCCTGTTTTTGTCGGCAATGTTGATGTGAGTTTGAGCTACACCAACAATAGTGGACTCTGTGGGGGAAAACTAAGAAGCTGTGATGAGAGTCTGTTTGATAGATCGTTTTGGTATAGTTTTGTTATTGGTTTTGTTTGGTCAGCAACTTCTTTCATGTATTATTATGTACCTTGGACAAAATTCAAGAAGAGGAGTAATGCTATACATCCCATAAAGAAGCAGAACCATCTGAAGGACACTAGACAAGTAACTGAATTGCTACCACTGGCCTTACAAGAGCAAGGAAACAAAGAGCTCACAAGATTGTTGGAGAGATTGATTCCAAGAATGAGCTTCAAGGATCTATGCAAGGCAACTGATTACTTTAGCGCAAACAACATGTTGGGACTAGGAACAACAGGGATTATGTACAAAGCAAAGGTACCTAATAACTGTTTCCTAGCAGTTAAGAGATTATATGATGCTGATAAGTACAAGAGGGAGTTCTTGCTTGAAATGATGATTCCAGGGAGACAGAGACACAGAAACATAGCTCCTCTGGTTGGATTCTGCATAGAAAGAAATGAAAGGATTCTAGTGTACAAGTACATGTCAAATGGAAAACTCTGTGATTGGTTACATCCTGATGAAGGACATCAAACTATGATATTGGAATGGCCTGAGAGGATTCACATTGCACTTGGGCTAGCAAGAGGTTTATCTTGGCTCCATAATAAGTGCAAGATAGTCCATCTCAATATAGGTTCTGAGAGTGTCTTGCTGGACAAGAATTTTGAACCAAAAATTTCCAATTTTGGAAAAGCAAAATTCATAAACCAGACGGTTGAAGATCATGAAAAGATGAAATTGTTTTGGATTGATGGAGTTGGGGTGAAGGGTGGTATTGAGAGGGATGTCTATGACTTTGGTATAATCATTTTTGAGCTTATAACAGGGAAAAGATTAAGTCCAATGACTGATTCTTCTGACAATGTTGATGGCTCTTTGATGAACTATATTAGAAATAACTTGTTCAATGATCCTATTGATTTTTATGATGCCATTGGTAAATCTATCATTGGTAAAGGGTTTGATCACAAAATCCTTTGTCTCCTAGAAGTTGCATGTGACTGTGTTAAGCCTTCTTTGGAGCAAAGGCCAAAGATGGTTGATGTGTACAAAACTGTAAGAGCCATGTGGGAGGGTTACAGACCCTGGTTTGATTCTGAAAGGCTGAGTTGTCCTGATCAGATAACATATGGCAAGGAAATAGAATGTATTTATTGA 1827 0.3853 MKSTTRNLSVLQILWPLFCLFKPGYGAESDIFCLQTIKNSLDQFNHLSSWDFNSNTEGYICGFIGVECQNNMEDRIIGLWLSHMGLEGQFPRCIENFTWLQNLDLSNNELSGYVPTDISSKLPYLTSLDLSNNNLYGEIPKGIANFSHLDTLRLDGNQLTGQIPPELGLLPQIRVFSVANNFLTGPVPVFVGNVDVSLSYTNNSGLCGGKLRSCDESLFDRSFWYSFVIGFVWSATSFMYYYVPWTKFKKRSNAIHPIKKQNHLKDTRQVTELLPLALQEQGNKELTRLLERLIPRMSFKDLCKATDYFSANNMLGLGTTGIMYKAKVPNNCFLAVKRLYDADKYKREFLLEMMIPGRQRHRNIAPLVGFCIERNERILVYKYMSNGKLCDWLHPDEGHQTMILEWPERIHIALGLARGLSWLHNKCKIVHLNIGSESVLLDKNFEPKISNFGKAKFINQTVEDHEKMKLFWIDGVGVKGGIERDVYDFGIIIFELITGKRLSPMTDSSDNVDGSLMNYIRNNLFNDPIDFYDAIGKSIIGKGFDHKILCLLEVACDCVKPSLEQRPKMVDVYKTVRAMWEGYRPWFDSERLSCPDQITYGKEIECIY* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00396 608 FunFam Nuclear pore complex protein NUP107 27 189 - -
Rops11g00396 608 SUPERFAMILY L domain-like 29 218 - -
Rops11g00396 608 Gene3D Phosphorylase Kinase; domain 1 273 383 - -
Rops11g00396 608 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Rops11g00396 608 ProSiteProfiles Protein kinase domain profile. 309 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00396 608 Gene3D Transferase(Phosphotransferase) domain 1 384 584 - -
Rops11g00396 608 PRINTS Leucine-rich repeat signature 100 113 - -
Rops11g00396 608 PRINTS Leucine-rich repeat signature 122 135 - -
Rops11g00396 608 Pfam Protein tyrosine and serine/threonine kinase 312 503 IPR001245 GO:0004672|GO:0006468
Rops11g00396 608 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 34 195 - -
Rops11g00396 608 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Rops11g00396 608 Gene3D Ribonuclease Inhibitor 29 214 IPR032675 -
Rops11g00396 608 SUPERFAMILY Protein kinase-like (PK-like) 289 575 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00396 Rops-Chr11 5414169 5416456 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00396 28 581 Receptor kinase-like Gene Family AT3G28450 35.517 1.12e-101 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Rops11g00396 PK_Tyr_Ser-Thr 5.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00396 - - gmx:106795644 921.383