Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00393 ATGGACTCACCCGAGAATCAGAGCAAGCAAATACTAGCAACTGGTTATGGTGCTGAAAGTGACATCTTTTGCTTACAAACCATCAAGAATTCGTTGGACCAATTTAATCATTTATCAAGCTGGGATTTCAACAGCAACACTGAAGGTTACATATGTGGATTTATTGGTGTTGAATGCCAGAATAGCATGGAAGATAGAATAATTGGTCTTTGGCTTTCTCATATGGGGTTGGAGGGCCCGTTTCCTCGTTGCATTGAAAATTTCACATGGTTGCAGAATTTGGACCTCTCAAACAACGAACTTTCTGGATATATCCCAACTGATATATCAAGTAAGTTGCCATATCTAACCTCACTTGATCTCTCAAATAACAATTTTTATGGTGAAATTCCAAAGGGTATTGCCAACTTCTCTCGCTTGGATACCCTTAGACTTGATGGCAACGAGTTAACTGGCCAAATCCCTCCAGAACTTGGGTTACTTCCCCAGATTAGAGTTTTTAGTGTTGCTAACAATTTCTTAACAGGGCCAGTGCCTGTTTTTGTCGGCAATGTTGATGTGAGTTTGAGCTACACCAACAATAGTGGACTCTGTGGGGGAAAACTAAGAAGCTGTGATGAGAGTCTGTTTGATAGATCATTTTGGTATAGTTTTGTTATTGGTTTTGTTTGGTCAGCAACTTCTTTCATGTATTATTATGTACCTTGGACAAAATTCAAGAAGAGGAGTAATGCTATACATCCCATAAAGAAGCAGAACCATCTAAAGGACACTAGACAAGTAACTGAATTGCTACCACTGGCCTTACAAGAGCAAGGAAACAAAGAGCTCACTAGATTGTTGGAGAGATTGATTCCAAGAATGAGCTTCACGTATCTATGCAAGGCAACTGATTACTTTAGCACAAACAACATGTTGGGACTCGGAACAACAGGGATTATGTACAAAGCAAAGGTACCTAATAACTGTTTCCTAGCAGTTAAGAGATTATATGATGCTGATAAGTACAAGAGGGAGTTCTTGCTTGAAATTATGATTCCAAGGAGACAGAGACACAGAAACATAGCTCCTCTGCTTGGATTCTGCATAGAAAGAAATGAAAGGATTCTAGTGTACAAGTACATGTCAAATGGAAAACTCTGTGATTGGTTACATCCTGATGAAGGACATCAAACTACAATATTGGAATGGCCCGAGAGGATTCACATTGCACTTGGGCTAGCAAGAGGGAAAAGATTAAGTCCAATGACTGACTCTTCTGACAATGTTGATGGCTCTTTGATGAAGTATATTAGCAATAAGTTGTTCAATGATCCTATTGATTTTTATGATGCCATTGATAAATCTATCATTGGTACAGATTTGATCCCAAAATCCTTTGTCTCCTAG 1389 0.3888 MDSPENQSKQILATGYGAESDIFCLQTIKNSLDQFNHLSSWDFNSNTEGYICGFIGVECQNSMEDRIIGLWLSHMGLEGPFPRCIENFTWLQNLDLSNNELSGYIPTDISSKLPYLTSLDLSNNNFYGEIPKGIANFSRLDTLRLDGNELTGQIPPELGLLPQIRVFSVANNFLTGPVPVFVGNVDVSLSYTNNSGLCGGKLRSCDESLFDRSFWYSFVIGFVWSATSFMYYYVPWTKFKKRSNAIHPIKKQNHLKDTRQVTELLPLALQEQGNKELTRLLERLIPRMSFTYLCKATDYFSTNNMLGLGTTGIMYKAKVPNNCFLAVKRLYDADKYKREFLLEIMIPRRQRHRNIAPLLGFCIERNERILVYKYMSNGKLCDWLHPDEGHQTTILEWPERIHIALGLARGKRLSPMTDSSDNVDGSLMKYISNKLFNDPIDFYDAIDKSIIGTDLIPKSFVS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00393 462 Gene3D Ribonuclease Inhibitor 20 205 IPR032675 -
Rops11g00393 462 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 70 411 - -
Rops11g00393 462 Gene3D Phosphorylase Kinase; domain 1 264 374 - -
Rops11g00393 462 Pfam Protein tyrosine and serine/threonine kinase 302 410 IPR001245 GO:0004672|GO:0006468
Rops11g00393 462 SUPERFAMILY L domain-like 20 209 - -
Rops11g00393 462 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Rops11g00393 462 PRINTS Leucine-rich repeat signature 91 104 - -
Rops11g00393 462 PRINTS Leucine-rich repeat signature 113 126 - -
Rops11g00393 462 FunFam Nuclear pore complex protein NUP107 18 180 - -
Rops11g00393 462 ProSiteProfiles Protein kinase domain profile. 300 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00393 462 SUPERFAMILY Protein kinase-like (PK-like) 280 410 IPR011009 -
Rops11g00393 462 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00393 Rops-Chr11 5373156 5377001 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00393 19 410 Receptor kinase-like Gene Family AT3G28450 39.109 1.10e-75 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Rops11g00393 PK_Tyr_Ser-Thr 9.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00393 - - gmx:106795644 601.668