Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00383 ATGAAGTCTACCACAAGAAATTTGAGTGTTCTCCAGATTTTGTGGCCATTGTTCTGTCTCTTTAAGCCAGGTTATGGTGCTGAAAGTGACATCTTTTGCTTACAAACCATCAAGAATTCGTTGGATCAATTTAATCATTTATCAAGCTGGGATTTCAACAGCAACACTGAAGGTTACATATGTGGATTTATTGGTGTTGAATGTCAGAATAATATGGAAGATAGAATAATTGATCTTTGGCTTTCTCATATGGGGTTGGAGGGCCAGTTTCCTCGTTGCATTGAAAATTTCACATGGTTGCAGAATTTGGACCTCTCAAACAACGAACTTTCTGGATATATCCCAACTGATATATCAAGTAAGTTGCCATATCTAACCTCACTTGATCTCTCAAATAACAATTTTTATGGTGAAATTCCAAAGGGTATTGACAACTTCTCTCACTTGGATACCCTTAGACTTGATGGCAACCAGTTAACTGGCCAAATCCCTCCAGAACTTGGGTTGCTTCCCCAAATTAGAGTTTTTAGTGTTGCTAACAATTTCTTAACAGGGCCAGTGCCTGTTTTTGTCGGCAATGTTGATGTGAGTTTGAGCTACACCAACAATAGTGGACTCTGTGGGGGAAAACTAAGAAGTTGTGATGAGAGTCTGTTTGATAGATCGTTTTGTTGTGATTGGTTACATCCTGATGAAGGACATCAAACTACGATATTGGAATGGCCCGAGAGGATTCACATTGCACTTGGGCTAGCAAGAGGTTTATCTTGGCTTCATAATAAGTGCAAGATTGTCCATCTCAATCTAGGTTCAGAGAGTGTCTTGCTAGACAAGAATTTAGAACCAAAAATTTCCAATTTTGGAAAAGCAAAATTCATAAACCAGACGATTGAAGATCATGAAAAGATGAAATTGTTTTTGATTGATGGAGTTGGGGTGAAGGGTGGTATTGAGAGGGATGTCTATGACTTTGGTATAATCCTTTTTGAGGTTATAACAGGGAAAAGATTAAGTCCAATGACTGACTCTTCTGACAATGTTGATGGCTCTTTGATGAAGTATATTAGCAATAAGTTGTTCAATGATCCTATTGATTTTTATGATGCCATTGATAAATCTATCATTGGTACAGGATTTGATCCCAAAATCCTTTGTCTCCTAGAAGTTGCATGTGACTGTGTTAAGCCTTCTTTGGTGCAAAGGCCAAAGATGGTTGATGTGTACAAAACTATAAGAGCCATGTGGGACGGTTACAGACCCTGGTTTGATTCTGAAAGGCTGAGTTGTCCTGATCAGATAACATATGGCAACGAAATAGAATGTATTTATTGA 1332 0.3814 MKSTTRNLSVLQILWPLFCLFKPGYGAESDIFCLQTIKNSLDQFNHLSSWDFNSNTEGYICGFIGVECQNNMEDRIIDLWLSHMGLEGQFPRCIENFTWLQNLDLSNNELSGYIPTDISSKLPYLTSLDLSNNNFYGEIPKGIDNFSHLDTLRLDGNQLTGQIPPELGLLPQIRVFSVANNFLTGPVPVFVGNVDVSLSYTNNSGLCGGKLRSCDESLFDRSFCCDWLHPDEGHQTTILEWPERIHIALGLARGLSWLHNKCKIVHLNLGSESVLLDKNLEPKISNFGKAKFINQTIEDHEKMKLFLIDGVGVKGGIERDVYDFGIILFEVITGKRLSPMTDSSDNVDGSLMKYISNKLFNDPIDFYDAIDKSIIGTGFDPKILCLLEVACDCVKPSLVQRPKMVDVYKTIRAMWDGYRPWFDSERLSCPDQITYGNEIECIY* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00383 443 FunFam Nuclear pore complex protein NUP107 27 189 - -
Rops11g00383 443 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Rops11g00383 443 Pfam Protein kinase domain 240 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00383 443 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 225 413 IPR046959 -
Rops11g00383 443 Gene3D Ribonuclease Inhibitor 29 215 IPR032675 -
Rops11g00383 443 Gene3D Transferase(Phosphotransferase) domain 1 225 418 - -
Rops11g00383 443 SUPERFAMILY Protein kinase-like (PK-like) 226 421 IPR011009 -
Rops11g00383 443 SUPERFAMILY L domain-like 29 269 - -
Rops11g00383 443 PRINTS Leucine-rich repeat signature 122 135 - -
Rops11g00383 443 PRINTS Leucine-rich repeat signature 100 113 - -
Rops11g00383 443 ProSiteProfiles Protein kinase domain profile. 125 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00383 Rops-Chr11 5220641 5222415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00383 239 414 Receptor kinase-like Gene Family AT3G28450 27.368 2.69e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Rops11g00383 Pkinase 1.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00383 - - gmx:106795644 338.191