Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00374 ATGGCTCCTTCAAGGAAAGATTTCAAGCCCACAGATGATGAACTCCTTCAATGTTTTCTCTACAATAAAATCCATGGTAAGCCTTTGCCTAATGATGTTACCATTCTTGAATATGACTTGTACGGTGAAAAGAATCCTTGGGAGATTTGGGAAGAGTTTCGAGATACCTACTCATACGGTGGAAAGGACCTCTACTTCTTCACCATTCTAAAGAAGAAGTCTAGTTTATGCTTTGCTCGCACCATTGGAATGGGTTCATGGGAAGGTGAAGATGTTGGGAAAGTTATAATGGCCAATGGTACGAACCAAAAACTGGGCTTAAAGAAATGTTATTGCTTTGAGAAGAGTTGCACTGACCATGATGGTAGATGGATCTTGCATGAATACAGTCTTGACTCATCTTTGCTAAGCGATTCGTCGGCCATTAATCATGTTCTTTGCCGATTTAGAAAGAATTTGGGAGATAAATCATGTAAAAGAGGAACGACAAATACTAAGCAAGAAGAAACCATGGTCGAAAGACAAAGGAAGATCGTCGTTCTTGGACTTGCGGCTACAAACGAATCCGACAACAATAATATTTTGTTGGGGAAAGGACCAAGAAACCATCCAGACTCTGAAGACAACAGGACCAAGGTGGTTGAAACTACCACAACAACAGAGAAAGACATCACCCTTATTCCCAATGAATTTAGCAAGGAATTATTGTTGGAATATATTGATATTAAGTACATGAATAGTAGGCAGTAA 750 0.3947 MAPSRKDFKPTDDELLQCFLYNKIHGKPLPNDVTILEYDLYGEKNPWEIWEEFRDTYSYGGKDLYFFTILKKKSSLCFARTIGMGSWEGEDVGKVIMANGTNQKLGLKKCYCFEKSCTDHDGRWILHEYSLDSSLLSDSSAINHVLCRFRKNLGDKSCKRGTTNTKQEETMVERQRKIVVLGLAATNESDNNNILLGKGPRNHPDSEDNRTKVVETTTTTEKDITLIPNEFSKELLLEYIDIKYMNSRQ* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00374 249 Pfam No apical meristem (NAM) protein 7 131 IPR003441 GO:0003677|GO:0006355
Rops11g00374 249 MobiDBLite consensus disorder prediction 192 217 - -
Rops11g00374 249 Gene3D NAC domain 11 155 IPR036093 GO:0003677|GO:0006355
Rops11g00374 249 SUPERFAMILY NAC domain 7 150 IPR036093 GO:0003677|GO:0006355
Rops11g00374 249 PANTHER NAC TRANSCRIPTION FACTOR 56 7 188 - -
Rops11g00374 249 ProSiteProfiles NAC domain profile. 2 152 IPR003441 GO:0003677|GO:0006355
Rops11g00374 249 MobiDBLite consensus disorder prediction 201 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00374 Rops-Chr11 5114844 5117584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00374 8 157 NAC Transcription Factor Family AT5G13180 33.758 9.36e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops11g00374 NAM 7.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00374 - - mtr:11433340 198.364