Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00367 ATGGAGGTCGTTCGCGTTGCTCAGATTCAATCTTCGCCATGGCAGAACGTGCTTCTTCTTACGGATTGGGTCCTTGACAAGATGTCAATATTGAGTCACCTCCCTCCATGCTTCCCTGCAAGAGAATTTGCGATATCACAGGCTATGAGGATTTACAGAGATGTTCTTGCTTCTGGTATGGGAATGAATGCACAGATAAAATCTATCACCACAAATGAAGTAGCAAACTCCTCCCGTTATGGCTGTCATCTTGGTCCAGAAGGACAGAGGAGTTTTCATATGGAGATTTCATCAGTCAGAGGGTTACCTGAACTGGGGATATTAGAGGATCCTAACTTTCTCCATCAGTGGCATTTAAGATCTATTGATAACAATAGCTTAACAGCTTCTGCTTTTGGAGAGACTTTACAAAAACATTCATACTCCAATAACCCAAACTTCAACACCAAAACTTCCATGGAAACTTCACCCAATGGAATTGAAAGAGCAGCAAAACAGCTCAAAAACAACAACTGGAATCAGAACAGAATTCCACAGACATCAGAGACACAATATGCTTCTGGCTCAAATCTTCTTTCATTTGCTGATTCCAATTACACAAGTCAATTGGGACTAGTGAAGCCTAAGGTGGAGATGGGGTGTCCTGAAATCAATAACACCACTCTTGAAAACATGTTGATCTCTCAAGGAACCTTGGGGAATCAAAACTATGTCTTCAAAGCTTCCCAGGAGGCCAAAAAGATTGGTACACATCCTAAACTTTCTCAACCTCATGATCACATAATAACTGAAAGGAAGCGGAGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCTCTTATTCCAGGCCTGAAAAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATTGAGTACTTGAAGCAAATGCAAAAGAAAGTGAGTGCTCTTGAGGAGGAGCAGAACAGGAACAAAACTCTGGAATCTGTGGTGATTGTGAAGAAATCTCAACTATCTAATGATGCTGAAGACTCTTCTTCAGACACTGATGATACATTTGAAGAGACACTACCTGAAATTGAAGCAAGAATTTGTGAAAGAAATGTTCTCATAAGACTACACTGTCGGAAAAATAATGGAGTTGTACAGAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAGTGCCTTGACATTTGGGAGTTCCACCCTTGACATAACCATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTTGTGAGAAACCTACGCTCAGCTTTTTCATCTTTGGCCTGA 1305 0.41 MEVVRVAQIQSSPWQNVLLLTDWVLDKMSILSHLPPCFPAREFAISQAMRIYRDVLASGMGMNAQIKSITTNEVANSSRYGCHLGPEGQRSFHMEISSVRGLPELGILEDPNFLHQWHLRSIDNNSLTASAFGETLQKHSYSNNPNFNTKTSMETSPNGIERAAKQLKNNNWNQNRIPQTSETQYASGSNLLSFADSNYTSQLGLVKPKVEMGCPEINNTTLENMLISQGTLGNQNYVFKASQEAKKIGTHPKLSQPHDHIITERKRREKLSQRFIALSALIPGLKKMDKASVLGEAIEYLKQMQKKVSALEEEQNRNKTLESVVIVKKSQLSNDAEDSSSDTDDTFEETLPEIEARICERNVLIRLHCRKNNGVVQKTISEIEKLHLKVINSSALTFGSSTLDITIIAQMDMEFCMTVKDLVRNLRSAFSSLA* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00367 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 318 IPR036638 GO:0046983
Rops11g00367 434 PANTHER BHLH TRANSCRIPTION FACTOR 127 430 - -
Rops11g00367 434 Coils Coil 294 324 - -
Rops11g00367 434 Pfam Helix-loop-helix DNA-binding domain 260 305 IPR011598 GO:0046983
Rops11g00367 434 SMART finulus 261 310 IPR011598 GO:0046983
Rops11g00367 434 Gene3D - 255 327 IPR036638 GO:0046983
Rops11g00367 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 304 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00367 Rops-Chr11 5004569 5021353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00367 94 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.746 8.27e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops11g00367 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00367 - - gmx:100798018 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00367 11 5004569 5021353 Rops11g00367 11 5004569 5021353 ECH
Rops2g01895 2 29743138 29747922 Rops11g00367 11 5004569 5021353 PCT