Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00364 ATGGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCGCCCAAGCCATCATCTGGACCCCGCAAGTCAAGGGAGTGCCTGCCTTTGATCCTCATCCTGCGAAACAGATTGAAGTATGCACTAACATACAGAGAAGTTATTGCCATCTTGATGCAGCGCCATGTTCTTGTTGATGGCTTGTTAGGAACACCACCGGCAGCCGTTGCTGGTGGATCATCTGTACCCCCACCACAGATTGCTACAACACCTGCATCACAATCTGCGTTCATTGTAAGGCCATGCTTCCAAGGTCCTGTATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAACATGTGTTCTAAGTGCCACAAAGACATGATCTTTGAACCGGGAGCAGCCAAGCTTGCGGCATCATCCATTGGAAATATTATGAATGGGTCATCGGAAGACCGAAAACGAACCTTTTGTTGTCGCCAATGGGGATATCCCAGATTGTTTCTAGAGAGCCTAAAACTATCTCTGTGCAGCCTTTATTTGCTTCGGGTTCGTGAGGAGAGTGGTGGTGAGGCAAAGCCGAAGGATGGTCCAAAACGTTGCGGCAGGTGCAATAAGCGAGTTGGTTTGACAGAGAGGACCATTTGGAGAGAGTTTGAGTTGAGGGAGGCTGGAGAGTCAGACAGAGACCCAAGAGAAGACTGTGACGACCAGAGCAGGAAGAAAAAGCTGAAGGGAGAACTAGGGAAAGCAAAACCAACAGAGTGTCTGCAACCATCATCTGGCCAGCCTCATTACTCTTCATCCCGTTCACACTCAGGTTTGCAAGAAGTCATTAATCCTTACTAG 882 0.483 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPRKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGLLGTPPAAVAGGSSVPPPQIATTPASQSAFIVRPCFQGPVLCINNCGFFGSAATMNMCSKCHKDMIFEPGAAKLAASSIGNIMNGSSEDRKRTFCCRQWGYPRLFLESLKLSLCSLYLLRVREESGGEAKPKDGPKRCGRCNKRVGLTERTIWREFELREAGESDRDPREDCDDQSRKKKLKGELGKAKPTECLQPSSGQPHYSSSRSHSGLQEVINPY* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00364 293 Pfam RS4NT (NUC023) domain 3 37 IPR013843 -
Rops11g00364 293 SMART A20_3 113 137 IPR002653 GO:0003677|GO:0008270
Rops11g00364 293 ProSiteProfiles Zinc finger A20-type profile. 110 144 IPR002653 GO:0003677|GO:0008270
Rops11g00364 293 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Rops11g00364 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 115 148 - -
Rops11g00364 293 MobiDBLite consensus disorder prediction 237 293 - -
Rops11g00364 293 MobiDBLite consensus disorder prediction 237 261 - -
Rops11g00364 293 Pfam A20-like zinc finger 115 137 IPR002653 GO:0003677|GO:0008270
Rops11g00364 293 MobiDBLite consensus disorder prediction 267 293 - -
Rops11g00364 293 Gene3D - 107 157 - -
Rops11g00364 293 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 84 IPR000876 GO:0003735|GO:0005840|GO:0006412
Rops11g00364 293 Gene3D - 1 97 IPR036986 GO:0003723
Rops11g00364 293 FunFam 40S ribosomal protein S4 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00364 Rops-Chr11 4966442 4968902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00364 1 104 Cytoplasmic Ribosomal Protein Gene Family AT2G17360 71.154 3.64e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00364 K02987 - sind:105166798 152.91