Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00333 ATGCTTCCACCTCCCCCTGGCACTTTCATAGATCGTGAAGAACTCATCCGGCATGTTGGAGACTTTGCTGTGTCCCAGGGATATGTGGTCACCATCAAGCAATCCAAGAGGGACAAAGTAGTTGTACTTGGCTGTGACAGAGGAGGTGTTTATCGCAACCGGCGAAAGCCTGCTGAGGAGTCCACAGCTGAACATAGCCGCAAAAGAAAAACTGGTTCTCGCCTAACAAATTGTCCTTTTGAAGCTGTGGGCAAGAAGAATGATGGCTTGTGGGTGCTCACCATTAAAAATGGAACACATAATCATGAACCATTAAAGGACATGTCAGAACATCCTTCTGCTTGTCGATTCACAGAGAGGGAAGTTTTGCTCATTAAAGAAATGTCAGAAGCTGGGTTGAAACCTCGACAGATTCTAAAAAGACTAAGACAAAGCAATCCAGAACTCTTATCAACCCCAAAGCATGTTTATAATGTTAAAGCTAAGCTTAGACAAGGAAACATGAATGTTAGGAATTTCAAGTCATTGAGACCTGAGAAATCTGCTGTAAGTAACAATTATCTTGCAGTAATTGAACCATCGTGGAGGCAGCACAACCCTCCAAGGGTTCCCAATCTTATTGGAGGCAGGTTTGTTGATTCAGAGTCATTTGCATCAATTGACATTTTAAACCCTGCAACCCAGCAAGTTGTTTCTCAAGTTCCAATGACTACAAATGAGGAGTTCGAAGCCGCAGTGTTTTCAGCAAAACGGGCTTTTCCACTGTGGCGTATCACACCAATTATCACTCGGCAGAGAATCATGTTTAAGTTCCAAGAGCTTATTCATAGAGACATTGATAAGATTGCTATGAATATTAGTGCTGAACATGGAAAAACACTGCGAGATGCTTATGGTGATGTGTTACGCGGGCTAGAGGTGGTTGAACATGCTTGTGGTATGGGAAATCTACAAAAGGGGGAATTTGTTCCCAATGTGTCAAATGGAATAGACACGTACAGCATTAGGGAGCCCCTTGGTGTCTGTGCTGGTATCTGCCCTTTTGACTTTCCGGCTATGATTCCCTTATGGATGTTTCCAATTGCTGTCACATGTGGCAATACATTTATTCTAAAGCCGTCAGAGAAGAGTCCAGGGGCAGCTGTGATACTGGCAGAGTTAGCAACAGAGGCTGGTATACCTAATGGTGTTTTGAATATTGTTCATGGTACAGATGACATTGTCAATGCTATCTGTGATGATGATGATATAAAGGCTGTCTCCTTTGTTGGTTCAAATACAGTTGGTGCTCATGTATATGCAAGAGCATCTACTAAAGGTAAATGTGTTCAGTCCAATATTGCTGCCAAAAATCATGCTGTTGTAATGCCTGATGCAAGAGAGGATGCTACTTTGAAAGCTCTGGTTGCAGCTGGCTTTGGTGCTGCTGGACAGAGGTGCACAGCACTGAGCGCTGTTGTTTTTGTTGGAAGTTTCAACCAATGGGAAGATAAACTAGTAGAGTATGCCAAAACACTTAAAGTCAATGCCGGAACAGAACCAGACACAGACCTTGGCCCAGTTATCGACAAACAGGCAAAGGAACACACTTGCAGATTGATTCAAAAAGGTGTGGAATCTGGTGCAAAACTAGTGCTTGATGGGCGAAACATTGTGGTTCCAGGATATGAACACGGAAACTTCATTGGTCCCACTATCTTATCTGATGTCACAGTTGACATGGAATGCTACAAGGAAGAGATTATTGGCCCAGTTCTTCTGTGTATGGAGGTTGACGGCATACCAGAGGCCATAAATATCATCAATAGCAACAAATATGGTAACGGAGCTTCCATTTTTACAACTTCAAGTGCAGCTGCAAGAAAATTCCAGACTGAAGTTGAAGTTGGACTGGTTGGCATAAATGTCCCCATCTCTGTTTCATTGCCCTTTTCTTGGTTTATTAGCTCCAGGCAATCTTTTGTTGGTGATTTGAATTTTGATGGCAGAGCTGGAATTCAGTTTTACACGCAGATAAAGACTGTGACCAAACAATGGACGGACTCATTAGATGGAGATGAAGCACCTCTAGAAATGCCTTGTGCTTAA 2088 0.4286 MLPPPPGTFIDREELIRHVGDFAVSQGYVVTIKQSKRDKVVVLGCDRGGVYRNRRKPAEESTAEHSRKRKTGSRLTNCPFEAVGKKNDGLWVLTIKNGTHNHEPLKDMSEHPSACRFTEREVLLIKEMSEAGLKPRQILKRLRQSNPELLSTPKHVYNVKAKLRQGNMNVRNFKSLRPEKSAVSNNYLAVIEPSWRQHNPPRVPNLIGGRFVDSESFASIDILNPATQQVVSQVPMTTNEEFEAAVFSAKRAFPLWRITPIITRQRIMFKFQELIHRDIDKIAMNISAEHGKTLRDAYGDVLRGLEVVEHACGMGNLQKGEFVPNVSNGIDTYSIREPLGVCAGICPFDFPAMIPLWMFPIAVTCGNTFILKPSEKSPGAAVILAELATEAGIPNGVLNIVHGTDDIVNAICDDDDIKAVSFVGSNTVGAHVYARASTKGKCVQSNIAAKNHAVVMPDAREDATLKALVAAGFGAAGQRCTALSAVVFVGSFNQWEDKLVEYAKTLKVNAGTEPDTDLGPVIDKQAKEHTCRLIQKGVESGAKLVLDGRNIVVPGYEHGNFIGPTILSDVTVDMECYKEEIIGPVLLCMEVDGIPEAINIINSNKYGNGASIFTTSSAAARKFQTEVEVGLVGINVPISVSLPFSWFISSRQSFVGDLNFDGRAGIQFYTQIKTVTKQWTDSLDGDEAPLEMPCA* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00333 695 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 448 648 IPR016163 GO:0016620
Rops11g00333 695 MobiDBLite consensus disorder prediction 53 71 - -
Rops11g00333 695 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 38 693 IPR010061 GO:0004491
Rops11g00333 695 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 207 454 - -
Rops11g00333 695 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 448 648 - -
Rops11g00333 695 Pfam Aldehyde dehydrogenase family 211 675 IPR015590 GO:0016491
Rops11g00333 695 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 205 679 IPR010061 GO:0004491
Rops11g00333 695 CDD ALDH_F6_MMSDH 203 679 IPR010061 GO:0004491
Rops11g00333 695 MobiDBLite consensus disorder prediction 53 73 - -
Rops11g00333 695 SUPERFAMILY ALDH-like 193 681 IPR016161 GO:0016491
Rops11g00333 695 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 473 484 IPR016160 GO:0016491
Rops11g00333 695 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 207 656 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00333 Rops-Chr11 4547318 4560914 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00333 172 663 Aldehyde Dehydrogenase Gene Family AT2G14170 71.602 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00333 K00140 - cave:132177147 1162.13