Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00331 ATGGCAACTTCACATTTATCAACAGCTGCTGAGCTATTTTCAAGACAACATAATCCCCCGAGGGTTCCAAATCTTATTGGGGGCAGTTTTGTCGACTCAAAATCATTGTCTTTCATTGATGTTATAAACCCTGCAACGCAAGAAGTTGTTTCACAAGTTCCTTTGACTACAGATGAAGAGTTTAAAGCTGCAGTAGCTGCAGCAAAGAAGGCATATCCATCATGGCGCAACACTCCAATCACAAAACGCCAACGTGTTATGTTGAAGTTCCAAGAGCTTATACGCAGAGATATGGATAAACTTGCCTTGAATGTGACCACTGAACAAGGAAAGACCTTAAAGGATGCACAAGGAGATGTATTCCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGACTACTCTACAGATGGGGGAGTATGTTTCCAATGTATCACGTGGAATTGATACTTTCAGCCTTAGAGAACCACTTGGTGTTTGTGCTGGTATTTGTCCCTTCAACTTTCCTGCAATGATTCCCTTGTGGATGTTCCCAGTGGCAGTTACCTGTGGCAATACCTTTATTCTAAAACCATCAGAGAAAGATCCTGGTGCTTCTTTAATGCTTGCAGAATTGGCAATGGAGGCTGGTTTGCCTGAGGGCGTCTTAAATATAGTTAATGGAACCCATGATATTGTAAATGCTATTTGTGATCATGATGACATCAAAGCCATATCTTTTGTTGGTTCCAATGTTGCTGGAATGCACATATATGCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAATATGGGGGCCAAAAATCATGCGGTTGTCATGCCTGATGCAAGTGTTGATGCTACTGTAAATGCTTTAATTGCTGCGGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTCAGCACAGTTGTTTTTGTTGGAGGCTCAAAACTATGGGAAAGTAAACTTGTGGAGCGTGCCAAGGCTCTTAAAGTAAAAGCTGGAACTGAACCTGATGCAGACCTTGGTCCAGTCATTAGTAAACAGGCAAAGGAGCGAATACATAGACTAATTCAATCTGGCTTTGAAAGTGGTGCCAGACTAGTGCTTGATGGAAGAAGTATAGTGGTCCCCGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTAGCTGATGTCACTGCCGACATGGAGTGCTACAAGGAGGAGATTTTTGGCCCAGTACTTCTTCTCATGGAGGCTGATAGCTTGGTAGAGGCCATAAATATTATCAACGAAAACAAGTATGGAAATGGTGCTACTATATTTACTACATCAGGTGTGGCTGCAAGGAAATTTCAGACAGAGATTGAAGCTGGACAGGTGGGCATCAACGTTCCTATTCCTGTTCCTTTGCCCTTTTTCTCATTTACCGGCAACAAGGCATCATTTGCAGGCGATCTCAATTTCTATGGCAAGGCAGGGGTTAACTTTTATACACAGATCAAAACAGTAACCCAGCAATGGAAGGATTCAGCTAGCGAGAACAAGATTAACATGGCAATGCCAACATCTCAAAAATCTTGA 1554 0.4292 MATSHLSTAAELFSRQHNPPRVPNLIGGSFVDSKSLSFIDVINPATQEVVSQVPLTTDEEFKAAVAAAKKAYPSWRNTPITKRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMTTLQMGEYVSNVSRGIDTFSLREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASLMLAELAMEAGLPEGVLNIVNGTHDIVNAICDHDDIKAISFVGSNVAGMHIYARAAAKGKRVQSNMGAKNHAVVMPDASVDATVNALIAAGFGAAGQRCMALSTVVFVGGSKLWESKLVERAKALKVKAGTEPDADLGPVISKQAKERIHRLIQSGFESGARLVLDGRSIVVPGYESGNFIGPTILADVTADMECYKEEIFGPVLLLMEADSLVEAINIINENKYGNGATIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTVTQQWKDSASENKINMAMPTSQKS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00331 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 41 475 IPR016162 GO:0016491
Rops11g00331 517 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 26 273 - -
Rops11g00331 517 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 267 467 - -
Rops11g00331 517 CDD ALDH_F6_MMSDH 22 498 IPR010061 GO:0004491
Rops11g00331 517 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 24 498 IPR010061 GO:0004491
Rops11g00331 517 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 292 303 IPR016160 GO:0016491
Rops11g00331 517 Pfam Aldehyde dehydrogenase family 30 494 IPR015590 GO:0016491
Rops11g00331 517 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 467 IPR016163 GO:0016620
Rops11g00331 517 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 8 514 IPR010061 GO:0004491
Rops11g00331 517 SUPERFAMILY ALDH-like 15 499 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00331 Rops-Chr11 4535944 4541886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00331 1 482 Aldehyde Dehydrogenase Gene Family AT2G14170 81.743 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00331 K00140 - gmx:100783569 942.954