Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00319 ATGGAACAAATATGTTTCAAATCTGATGATGATTTTGAAGGAGAAGGTGAGCATGAAGATGGTGATGGTGATGGTGATGGAGATGGAGATAAGAACAACAACAACAACAAGAAGAGGAAGAAGTATCATAGACACACTGTTGAGCAAATCAGAGAAATGGAAGCGCTTTTCAAAGAATCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATAGTCGAACCCAAATCAAGGCAATACAAGAGCGCCATGAAAATTCATTGTTGAAGACAAAATTAGAGAAACTAAGGAAGGAAAATAAGGCCATGAGAGAGACCATAAACAAATCTTGTTGCCCCAATTGTGGCATGGCCACAACTAGCAGTGATACTTCAATGTCCACTGAAGAAAAACAACTTCGTATTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTTAAAGCAGCTTTGGGGAAATACCCACCAGGGACAACATCCCCTTCAAGTTCTGCTGGCCATGATGATGAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGGCTTGAGAAGTCAAGGATAATGGAGATAGTAAACCAAGCAAGTGAGGAGCTTATACTCTAA 660 0.403 MEQICFKSDDDFEGEGEHEDGDGDGDGDGDKNNNNNKKRKKYHRHTVEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNSRTQIKAIQERHENSLLKTKLEKLRKENKAMRETINKSCCPNCGMATTSSDTSMSTEEKQLRIENAKLKAEVEKLKAALGKYPPGTTSPSSSAGHDDEENRSSLDFYTGIFGLEKSRIMEIVNQASEELIL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00319 219 MobiDBLite consensus disorder prediction 1 74 - -
Rops11g00319 219 Pfam Homeodomain 39 94 IPR001356 GO:0003677
Rops11g00319 219 CDD homeodomain 43 94 IPR001356 GO:0003677
Rops11g00319 219 Gene3D - 18 95 - -
Rops11g00319 219 SUPERFAMILY Homeodomain-like 27 97 IPR009057 -
Rops11g00319 219 FunFam Homeobox-leucine zipper protein HDG1 26 112 - -
Rops11g00319 219 Coils Coil 95 122 - -
Rops11g00319 219 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Rops11g00319 219 ProSitePatterns 'Homeobox' domain signature. 71 94 IPR017970 GO:0000981|GO:0006355
Rops11g00319 219 SMART HOX_1 38 100 IPR001356 GO:0003677
Rops11g00319 219 MobiDBLite consensus disorder prediction 46 69 - -
Rops11g00319 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 37 218 IPR042160 -
Rops11g00319 219 Coils Coil 146 166 - -
Rops11g00319 219 MobiDBLite consensus disorder prediction 166 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00319 Rops-Chr11 4405622 4407413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00319 27 217 Homeobox Transcription Factor Family AT1G79840 64.433 1.93e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops11g00319 Homeodomain 8.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00319 K09338 - zju:107405188 298.13