Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00314 ATGAGAGGACGGAAGACAGAGATAAAGAAGATTGAAAACATTGCATCTAAGCGGGTGACTTTTTCTAAGAGGAGGAGAGGGCTTTTTAAGAAGGCTCAGGAGCTTTCAACTCTTTGTGATGCTGAGATTGCCCTCACTGTCTTTTCTGAAGCTGGCAAGCTCTTCGAATACGCTAGCTCAAGTGTGCACCAGGTAGTTGACAGGTACAATCTGCATCCAAGCATACCACACCCATCTGCAGAGCTGCAGCCTGACAGTGATACCAATAACTACTTCATGATGCGCGAGGAAGTGGCAGATAAGACTCGTGAACTGAGGAAATTGAACGGGGAAGAGTTGCAAGGATTACAAATTCGAGAATTACAGAAACTAGAGAAACTACTAAGAAAAGGTTTGACCCGTGTTTCAAAAGCAAAGGATGAAAGAATTGTAAAGGATATCACTGCGCTCAAGAAAAAGAAAGTTGAACTGGTACAAGACAACCGACGACTCAAACAGATACAAAGTTCTGCACACGATCAAGGGCAGTCATCCAACTCAATCATGATTTGCAGCCCATCAAATCGTGCTAAAGACTCAGATAATTATGACGCTTCTCTCAACTTGGGGCTGCCTTTGTTGAAATGA 627 0.4338 MRGRKTEIKKIENIASKRVTFSKRRRGLFKKAQELSTLCDAEIALTVFSEAGKLFEYASSSVHQVVDRYNLHPSIPHPSAELQPDSDTNNYFMMREEVADKTRELRKLNGEELQGLQIRELQKLEKLLRKGLTRVSKAKDERIVKDITALKKKKVELVQDNRRLKQIQSSAHDQGQSSNSIMICSPSNRAKDSDNYDASLNLGLPLLK* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00314 208 Coils Coil 121 141 - -
Rops11g00314 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Rops11g00314 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Rops11g00314 208 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops11g00314 208 CDD MADS_MEF2_like 4 69 IPR033896 GO:0000977|GO:0045944
Rops11g00314 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Rops11g00314 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops11g00314 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops11g00314 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops11g00314 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops11g00314 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 - -
Rops11g00314 208 MobiDBLite consensus disorder prediction 167 195 - -
Rops11g00314 208 Pfam K-box region 88 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Rops11g00314 208 SUPERFAMILY SRF-like 4 81 IPR036879 GO:0003677|GO:0046983
Rops11g00314 208 Coils Coil 147 167 - -
Rops11g00314 208 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00314 Rops-Chr11 4210646 4215955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00314 1 205 MADS-box Gene Family AT2G22540 43.277 1.86e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Rops11g00314 K-box 9.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00314 - - aprc:113860188 216.083