Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00302 ATGTCTCTCAGCGACAGCAAGAAGAAGAAGCAGAAGAACAGCAACAAACATGAAGAAGAAACAGAGGAACAGCAACAGAAGAAAGAAGAGTTCATGATCAAACCAGAGAAGTTGACACCTTCAATCGACACTTCCCAATGGCCCATACTCCTCAAGAACTACGACCGTCTCAATGTTCGAACCGGACACTACACCCCAATACCCTCCGGTTACTCCCCTCTCAAACGCCCCATCCAAGAGTACCTCAAATACGGTGTTCTCAACCTCGACAAACCCGCTAACCCTTCTTCCCATGAGGTTGTCGCTTGGATCAAACGGATCCTCCGGGTCGAAAAAACGGGTCACAGCGGAACCCTAGACCCCAAAGTCACCGGAAACCTCATCGTTTGCATCGACAGAGCCACGCGTTTGGTGAAGTCTCAACAGGGTGCCGGAAAAGAGTATGTCTGTATCGCGCGCCTCCACTCCGCCGTCCCCGACGTCACCAAGGTGTCACGTGCCCTCGAGACCCTCACCGGCGCTGTCTTTCAACGGCCGCCGTTGATTTCCGCCGTGAAGCGGCAGCTCAGGATTAGGACTATCTATGAAAGTAAGCTCCTTGAGTTTGACCCTGATAGGCATTTGGTTGTTTTTTGGATTTCGTGTGAGGCTGGTACTTATGTAAGGACCATGTGTGTTCATTTGGGTTTGGTTCTTGGTGTGGGTGCTCACATGCAGGAGCTTAGGAGGGTTAGGAGTGGGATTATGGGTGAGAAGGATAACATGGTTTCTATGCATGATGTCATGGATGCTCAATGGGTTTATGATAATTATAGGGATGAGAGTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTTGTTAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCCAAGTTGATGATTCCTGGCTTGCTTAGGTTTGAGAATGACATTGATGTTGGGGAGGAGGTTGTGCTTATGACCACCAAGGGTGAAGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTGTGGTTGCTAAGATTAAGAGGGTGGTTATGGATAGAGATACCTATCCCAGGAAATGGGGTTTGGGGCCTAGGGCTTCCATGAAGAAGAAACTGATTGCTGCAGGGAAGCTGGATAAGCATGGGAAGCCGAATGAGAAAACTCCCCAAGAGTGGCTGAGGAATCTGGTTTTGCCCGCTGGTGGGGATAGCATGATTGCAGGTATGGCTGCTGCTCTTGAGCCTGAAGCTGCAGAGAAAGAGGCTGCTGGAGAAGAGGGTGAGAAGGTTGGGGAAGGGCGTAAAAGAAAGAAACATGAAAGCACTGATAGCCCTCTTCCTGCTAAGAAGGCGAAAGTTGATGAAGTTGAAGAGGTTGAAAAACAAGAAAAAGTAAAGCTGAAGAAAGTAAATGATGAGGCTGTGGAGGTTGAAGTTGAGAAGAAAGAGAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGTGAAGTGGCATCATCAGATGAGGAGAAATCTGAGAAAAAGAAGAAAAAGAAGCACAAGGAAAAGGTTGAAGATGGTTCGCCAGAATTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGAAAAGGATAATGAAGATAACGCTGCCGAAATTAATGGAAAGGATGACAGTAGTGCTGGTAAGAGTGAAAAGAAGCATAAGAAGAAGAAAAACAAAGATGCCGAGGAAGAATAG 1764 0.4637 MSLSDSKKKKQKNSNKHEEETEEQQQKKEEFMIKPEKLTPSIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPIQEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVTKVSRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEFDPDRHLVVFWISCEAGTYVRTMCVHLGLVLGVGAHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNEKTPQEWLRNLVLPAGGDSMIAGMAAALEPEAAEKEAAGEEGEKVGEGRKRKKHESTDSPLPAKKAKVDEVEEVEKQEKVKLKKVNDEAVEVEVEKKEKKKKKKKDKENGEVASSDEEKSEKKKKKKHKEKVEDGSPELDKSEKKKKKKKEKDNEDNAAEINGKDDSSAGKSEKKHKKKKNKDAEEE* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00302 587 SMART DKCLD_2 43 101 IPR012960 -
Rops11g00302 587 Pfam tRNA pseudouridylate synthase B C-terminal domain 222 288 IPR032819 -
Rops11g00302 587 Pfam TruB family pseudouridylate synthase (N terminal domain) 105 221 IPR002501 GO:0006396
Rops11g00302 587 Pfam PUA domain 292 364 IPR002478 GO:0003723
Rops11g00302 587 Coils Coil 7 34 - -
Rops11g00302 587 CDD PseudoU_synth_hDyskerin 83 265 - -
Rops11g00302 587 MobiDBLite consensus disorder prediction 1 34 - -
Rops11g00302 587 FunFam H/ACA ribonucleoprotein complex subunit CBF5 77 283 - -
Rops11g00302 587 Pfam DKCLD (NUC011) domain 44 101 IPR012960 -
Rops11g00302 587 Gene3D PUA domain 44 375 IPR036974 GO:0003723
Rops11g00302 587 Coils Coil 468 509 - -
Rops11g00302 587 MobiDBLite consensus disorder prediction 431 587 - -
Rops11g00302 587 SMART pua_5 292 366 IPR002478 GO:0003723
Rops11g00302 587 Gene3D Pseudouridine synthase 77 283 - -
Rops11g00302 587 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 2 555 IPR004802 GO:0006396
Rops11g00302 587 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 51 376 IPR004802 GO:0006396
Rops11g00302 587 SUPERFAMILY PUA domain-like 291 372 IPR015947 -
Rops11g00302 587 SUPERFAMILY Pseudouridine synthase 44 289 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Rops11g00302 587 ProSiteProfiles PUA domain profile. 291 366 - -
Rops11g00302 587 CDD PUA_Cbf5 290 364 - -
Rops11g00302 587 MobiDBLite consensus disorder prediction 433 572 - -
Rops11g00302 587 NCBIfam uncharacterized domain 2 287 363 IPR004521 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00302 Rops-Chr11 4030782 4032786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00302 1 502 NAC Transcription Factor Family AT3G57150 76.494 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00302 K11131 - gmx:100806355 826.239