Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00300 ATGGGGCTGCATCACAGAAAGTTGATGCCAGATATCTGTCAATTGATCTGTCATGTGAAGGAGTCTGGTTCATGTTCATCAGAGTGCAAAGTTTGTCTAAAGATATGCCTAACTACTAAGCCACCATATCCTTATTATTTTTCTCCTCCATCATCACCACCACCACAAGTTCCTCCTTTCTACTTTGATGAAGATGAACATCAAGGAAACCACCACAAAATCACCACCTATTTGATCCTTGCTCTTGCTCTTCTAGCTGCTGCTTTCTTTGTTGTTTGCTGCGGTGCCATCTATACAAGGCTTTGCTCAAGGAGGAGGGTATCATCAAGGGATCAAACACAGGAGACCCGTGATGATTTTCTGGATGAAGAACATGGCCCTGTGGTGGATCATCCCATTTGGTATATCCGCACCCGTGGTCTCCACCAATCAATCATCAACGCCATCACAGTTTGTAAGTATAAGAAAGGCGAGGGCTTGATTGAAGGAACAGATTGCTCTGTTTGCTTGAGTGAGTTTCAAGAGGATGAGAATCTCAGACTTTTGCCAAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACATGGCTTAGATCACGTACCAATTGTCCAATGTGCCGGGCTCCCATTGTTACCGACCCTGCAAGGATTCCATCTATGGAGTCTATTGTTGTTGATTCAAGTTCCTTTGAACATACCCAGATGGAAATTTTGGAAAATATTGGTGAAACCAGCGGAGGAATAGAAAATGGTGCTTCTGATTCTGAATTGAGGAGTAGGGCAGAGGAAGAAGACCAAATGGAAGTTGAAGATGGGGTAAGGGTATTATGTGATGCTGAAAGGCCAGTTGCAGAGGTGGGAAGGATTAGGCCTAGAAGATCTGTTTCTCTGGATTCTTCTTTCGTTGCGAATATCAATATAGCTCTTGAAACTGTTCTATCAGTAGAATCTAATGGTGATTCAAATAGAGTCATTGAACCTACTGTTTCGAAGAGGGTTACTGAAAACGATAATTTGCCAACTACATCCAAAGGTAGCTCTTCTTTCAGGTCAACAAGATATCTGCAGGGTGTTCCTAGCTCAATGAAGAGGTCACGTTCCTACAACGGGAAATACCTTCTTTCCTGGTATGGCCGCAGTCAGAGGAAGCCAAATGCTCCTCTGAGAAGCTTTGATTTGTCCAACTAG 1191 0.4299 MGLHHRKLMPDICQLICHVKESGSCSSECKVCLKICLTTKPPYPYYFSPPSSPPPQVPPFYFDEDEHQGNHHKITTYLILALALLAAAFFVVCCGAIYTRLCSRRRVSSRDQTQETRDDFLDEEHGPVVDHPIWYIRTRGLHQSIINAITVCKYKKGEGLIEGTDCSVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSRTNCPMCRAPIVTDPARIPSMESIVVDSSSFEHTQMEILENIGETSGGIENGASDSELRSRAEEEDQMEVEDGVRVLCDAERPVAEVGRIRPRRSVSLDSSFVANINIALETVLSVESNGDSNRVIEPTVSKRVTENDNLPTTSKGSSSFRSTRYLQGVPSSMKRSRSYNGKYLLSWYGRSQRKPNAPLRSFDLSN* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00300 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 215 IPR013083 -
Rops11g00300 396 SMART ring_2 166 207 IPR001841 -
Rops11g00300 396 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 64 216 IPR044675 -
Rops11g00300 396 CDD RING-H2_EL5-like 165 208 - -
Rops11g00300 396 FunFam RING-H2 finger protein ATL54 141 214 - -
Rops11g00300 396 MobiDBLite consensus disorder prediction 336 366 - -
Rops11g00300 396 MobiDBLite consensus disorder prediction 245 266 - -
Rops11g00300 396 Pfam Ring finger domain 165 208 IPR001841 -
Rops11g00300 396 SUPERFAMILY RING/U-box 160 216 - -
Rops11g00300 396 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00300 Rops-Chr11 4027343 4028734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00300 5 270 C3H Transcription Factor Family AT1G72220 38.776 5.15e-46 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00300 - - gmx:100804758 471.47