LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g00294	ATGGATGTAGGGGAGTGGAAGAAGCCAATGGCGAGCTATCTCTTACGCTTCCATTCCGACCAACTTCGCTCCATCGCTTCCTCTCCCGATTCCACCCTTCATTTCCCTCTTTACCTCGATTTCGCAGAGTTGATGGAAGATGATCCTCGTATTGCCCGTCTTCTCTTTTCCCAACCCAACACCTACTTGCAAGTCTTCGATGATGCTGCTCTTTGGGCTCATAAAATCATATTGGGAGATATGGCGCCTGAAATGAATGGGGTTGAGAAAGAGTTCATTCATGTTCGTATTAACGTCAGTGGCTCTCCCCTTGAATGCCCTGAGACTTTTCCAAGCATAGGACGTGTTCGAGTGCAGCACCGTGGAATTCTTCTCACTCTCAAAGGGATAGTAATCAGGTCCGGAGCAATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGTCCCAAATGCAAAAACAGCTTCACAGTTTATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCGGTTTGCCCAATCCAGAAGTCTAAACCCTGTGGAGGCACGAAATTCCAGTATGTAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAAATCCAAGAAAGTACACAGGTGCTAGGTGTCGGGGCGATTCCTCGTTCAATTATTGTCATTTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTAAAGGATGTGCGCTGCGACCTTGATCCTGTATTAATAGCCAACAATGTAAGGAGAATCAATGAGCTGAAGTCAGAAATTGATGTTTCTGATGATATTATTATGAAATTCAAGCAGTTCTGGGTTCACTTCAAAGATGCACCTTTAAAAGGGAGGAATGCTATTCTACGAGGAATTTGCCCACAAGTATTTGGTCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTAATTGGAGGTGTACAACATGTCGATGCTTCTGGAACAAGGGTGAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACCGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGATCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAAGATGGGGGTGAGTGGATGTTGGAAGCTGGGGCCCTTGTCTTGGCAGATGGGGGACTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACGGTATTTGGTGCCACAAATCCTAAGGGACAGTATGATCCTGATCAACCTCTTTCTGTCAATACAACACTCTCTGGTCCTTTATTAAGCAGATTTGATATTGTCCTCGTGCTTTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACCGGATAGAACCAACAATGATGAAGATCTAGTAAATATCTGGCCTCTTTCTACACTCAAGAGGTATATATACTATGTGAAAGAAAATTTCAGACCAGTCCTCACGAGAGAGGCTGAAATAGTTATATCCAGTTATTATCAACTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGGACAACTGTCCGCATGCTGGAAAGTTTGATACGCCTGGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAGGTGACTAGACTAGATGCCATCACGGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATTGGGAATGCATTGCATTCCAATTTTACTGACAACCCCGATCAGGAATATGCCAAGCAAGAAAGATTGATCCTAGAAAAATTGGGATCAATAGATGACTTTTCTGATGAGAATAGCATGGAGCACTAA	1980	0.4338	MDVGEWKKPMASYLLRFHSDQLRSIASSPDSTLHFPLYLDFAELMEDDPRIARLLFSQPNTYLQVFDDAALWAHKIILGDMAPEMNGVEKEFIHVRINVSGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCPKCKNSFTVYPEVEARNSISLPSVCPIQKSKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSIIVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNVRRINELKSEIDVSDDIIMKFKQFWVHFKDAPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTNNDEDLVNIWPLSTLKRYIYYVKENFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLGSIDDFSDENSMEH*	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g00294	659	Gene3D	-	277	614	IPR027417	-
	Rops11g00294	659	ProSiteProfiles	MCM family domain profile.	301	504	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Rops11g00294	659	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	36	634	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Rops11g00294	659	FunFam	Probable DNA helicase MCM9	279	613	-	-
	Rops11g00294	659	SUPERFAMILY	Nucleic acid-binding proteins	34	251	IPR012340	-
	Rops11g00294	659	CDD	MCM9	304	608	-	-
	Rops11g00294	659	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	478	486	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Rops11g00294	659	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	400	414	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Rops11g00294	659	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	428	441	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Rops11g00294	659	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	342	357	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Rops11g00294	659	Pfam	MCM P-loop domain	303	506	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Rops11g00294	659	Gene3D	-	116	244	IPR012340	-
	Rops11g00294	659	Gene3D	-	140	196	-	-
	Rops11g00294	659	SMART	mcm	109	610	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Rops11g00294	659	Pfam	MCM AAA-lid domain	527	608	IPR041562	-
	Rops11g00294	659	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	311	618	IPR027417	-
	Rops11g00294	659	SMART	AAA_5	343	492	IPR003593	GO:0016887
	Rops11g00294	659	Pfam	MCM OB domain	116	244	IPR033762	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g00294	Rops-Chr11	3941956	3951479	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g00294	5	633	Core DNA Replication Machinery Family	AT2G14050	76.582	0.0	1007

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g00294	K10738		-	gmx:100776255	1184.09