Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00285 ATGGAAAACGACGACGTCGACATGCAGGCGGCAGAGACCAACGAAGCAGAATTGGATGACATGAAGAAGCGGTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGATCTGTGCAAGATCCTGCAACTGCTTCTGCAAGTCATGCCAATAAAGAGGAAGTAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCAGAAGAAGTGCAGCAGCATTTTCAATCATGTGGAACAGTAAACAGAGTCACCATTCGGACTGATAAGTTTGGCCAACCTAAGGGTTATGCTTATGTAGAGTTCGTTGAGGTAGAGGCTGTTCAAGAGGCCCTTTTGCTGAATGAATCTGAACTTCATGGGCGCCAATTGAAGGTAACGGCTAAGAGGACCAACATACCAGGGATGAAGCAGTATCGTCCCCGCCGGCCCAATCCTCACATGGGGTTTCGAGGCAGAACTCCATATGCACCTCCTTTTGCCTATTCACCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGCCAATGCGCTATAGCCCCTACTATTGA 591 0.4805 MENDDVDMQAAETNEAELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATASASHANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPHMGFRGRTPYAPPFAYSPYGYGKVPRFRMPMRYSPYY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00285 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 15 156 - -
Rops11g00285 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Rops11g00285 196 CDD RRM_II_PABPs 69 140 - -
Rops11g00285 196 MobiDBLite consensus disorder prediction 43 66 - -
Rops11g00285 196 SUPERFAMILY RNA-binding domain, RBD 56 166 IPR035979 GO:0003676
Rops11g00285 196 MobiDBLite consensus disorder prediction 1 23 - -
Rops11g00285 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Rops11g00285 196 Coils Coil 8 45 - -
Rops11g00285 196 Gene3D - 1 150 IPR012677 -
Rops11g00285 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00285 Rops-Chr11 3866503 3870943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00285 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 7.71e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00285 K14396 - gmx:100791351 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g01784 2 27505779 27506723 Rops11g00285 11 3866503 3870943 PCT