Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00279 ATGGAGAGTGAGAAGCATGAAGAAGCAGAAGGAGCAGTGAAGATGGAGTGGCTGTCAATGATAGACTCAACCACTCTGTCACAATCAGAGCTCCATGCCCTTTCTCTCTCCTCCCTCCCCTCCTTCGACCTTCGCTCTACTCATGATCTCGTCACCCCCAAAATCGACCCTTCCCTCTTCAACGAGAGCGCCGGCTCCCACCGTCAGACCTACTCCAGACCCCGTCACCGCCGCGTCGCCGCCACCGCTCTACTCCCTACCCCTCCCCTCCCCTCCGACCACCGCGTGATCATCGATTACCTCAAGCAATTGATCAGGGAAGACCCCAAGTTCGATCAGGTCGAGCTCCTCTCCCCACCTTCCATTCCCGAACCTATATTCGCCGGCGGTGAGGAGAGGGAGAGGGTGATGAAGAGAAAGAGAGGGAGGAAACCCAAGGTGAAGGTGCATTTGGAAGAATGCTACAGAGGAATGGAGATTGTTAACAAGAACGGCGTCGCCATTGATCTCTCTGCCTTGGCCAATGCCGAAGACCCCTTCGCCGAGGAGCTGAGAAGACGAACAGAGGGGCTGCAAAATGAAGAGGAGCTGTTAGGGTTTTTGAGGGATTTGGTGGGACAATGGGGTAGTAGAAGGAAGAGGAGGAGGATCGTTGATGCTGCTGATTTTGGAGATGTATTGCCTCTTGGTTGGAAGCTTCTGTTGGGTTTGAAGAGAAAAGATGGTCGTGCTTGGATTTATTGCCGCAGATACATCAGCCCTAGTGGACAGCACTTTGTGTCTTGCAAAGAAGTTTCTTCATATTTGCAGAGTCTTTTTGGTCATAGTGAAGCAAATTTACAATTCAGTCGTAGGAGTGAAAATATGCTGCTGGAACAGAGAGTGACTAGTGAAAATTCTGCAGGTGTTACCAGGGAGGATCAAGATCAACGGCAGATTGTTGCGACTAACTCGGATGTGTCCGGTTTATCTGTTTCTAATGAACGACTGAAGGAAGTGGCCTTATTGGGGATTGACAATCTCGCTGATGTGCAAATACATGACCTATTTGAATGTCACAAATGCAGCATGACCTTTGATGAGAAGGATGCTTACTTGCAGCACCTGTTGTCTTTTCACCAGAGGACGACCAGGCGCTATCGACTTGGTTCTTCTGTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTGGAGAGGCGTCGTTACAATGGTCATGTCGGGATCCATGTTAGGAACTATGTGAGGAAAGTTGAAGATTCACCGGGTCAGGCAAATGTCCAAAGGATGGACAAGTCTCCATTCAGGGAGGAGATGCCTTCAAGGATCTCTAAGATGGATGCCCTCATTGAAATTGCACAAAACTCTATTATGGAGGATTCTATTGCAGAACCCCTTAGTTCAGCTAAACTGAATATGATTCCTTTTTCTGAAATTGCTGTTGGTGACTTAGACCAAGACTTAGACTATGAGTCTCCAATCAGTGAACAGAAAATGGAAGATAGCTTGACTGACAACAATGTGGTTCAGGATTTAAATCAGCAAGATAGCCCACATTTACTCATGGATGAAAACATAGAGGAAATGGATGATGATAGCCATGTTATTGATGCAAAGATGGTTACCTTTCTAGATAACATGGGTTTGTTATCTGCAAATACGCAAAATGTCAATGCATCTGATACTTCTAAGGAAAAATATGATGTGGCATTGACTGCTGAGCAGTTTGATCAGTCTGGGATTGATTTGGAAGGAGTTACTCAAAGCCCTTTACTTCCTTTATCTGGCAATAACATGATACCTGAATCTGAGAGGGGTGAAAATCCTGCTTGCACATATACTAAGGGGCAATTAAAACTTGATGAAGACAATAGTAATATGAGTGAGGTGAAAATTGGTTTAGATGGCTGCAAGGATGTACCTATTAGCGTTAATGTTCAAGAGACAGTAATGCCAGCTTCTGAAGAAAATGTGGTCCATTCTAGGGTTTCTAACTCCTCTATATCCATGGAACAATCTTTGGATTGTTTTCCTGCATTCAGCTCAGATAAGGAATTGAGGTTGGATGAAATAGGTACTATCGAGTATGATTTTGCAAGTGCTCGAGATTCTCTTTCTCTGCCTCATGTGCCAACTGAATTGGCAAATAACACAGTGGTGGAAGGGACTTATGCATCCTCAGTTCAATTTGAATCACAAGAAGTTATTGAAAATGTGGATGGCAGAAATCAGCTTACAACTCTTGTAAGGAAAAAATCTCTGGTCAAATCAATGTGTTGGATAGTGGATCACCGAATGCTGACCATATTTAGACTGCTAAATGATATTAGAAAGATCAGTAGAAGATGA 2376 0.4461 MESEKHEEAEGAVKMEWLSMIDSTTLSQSELHALSLSSLPSFDLRSTHDLVTPKIDPSLFNESAGSHRQTYSRPRHRRVAATALLPTPPLPSDHRVIIDYLKQLIREDPKFDQVELLSPPSIPEPIFAGGEERERVMKRKRGRKPKVKVHLEECYRGMEIVNKNGVAIDLSALANAEDPFAEELRRRTEGLQNEEELLGFLRDLVGQWGSRRKRRRIVDAADFGDVLPLGWKLLLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLFGHSEANLQFSRRSENMLLEQRVTSENSAGVTREDQDQRQIVATNSDVSGLSVSNERLKEVALLGIDNLADVQIHDLFECHKCSMTFDEKDAYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEDSPGQANVQRMDKSPFREEMPSRISKMDALIEIAQNSIMEDSIAEPLSSAKLNMIPFSEIAVGDLDQDLDYESPISEQKMEDSLTDNNVVQDLNQQDSPHLLMDENIEEMDDDSHVIDAKMVTFLDNMGLLSANTQNVNASDTSKEKYDVALTAEQFDQSGIDLEGVTQSPLLPLSGNNMIPESERGENPACTYTKGQLKLDEDNSNMSEVKIGLDGCKDVPISVNVQETVMPASEENVVHSRVSNSSISMEQSLDCFPAFSSDKELRLDEIGTIEYDFASARDSLSLPHVPTELANNTVVEGTYASSVQFESQEVIENVDGRNQLTTLVRKKSLVKSMCWIVDHRMLTIFRLLNDIRKISRR* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00279 791 Gene3D Classic Zinc Finger 339 425 - -
Rops11g00279 791 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 9 622 IPR037472 -
Rops11g00279 791 ProSitePatterns Zinc finger C2H2 type domain signature. 352 373 IPR013087 -
Rops11g00279 791 Gene3D - 207 315 - -
Rops11g00279 791 ProSiteProfiles Zinc finger C2H2 type domain profile. 397 424 IPR013087 -
Rops11g00279 791 SUPERFAMILY DNA-binding domain 223 280 IPR016177 GO:0003677
Rops11g00279 791 SMART c2h2final6 397 419 IPR013087 -
Rops11g00279 791 SMART c2h2final6 350 373 IPR013087 -
Rops11g00279 791 ProSiteProfiles Zinc finger C2H2 type domain profile. 350 378 IPR013087 -
Rops11g00279 791 ProSitePatterns Zinc finger C2H2 type domain signature. 399 419 IPR013087 -
Rops11g00279 791 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 217 289 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00279 Rops-Chr11 3803117 3807874 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops11g00279 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00279 - - gmx:100526917 967.222