Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00271 ATGGCGGAGAGTGCTTCTTCTTACGGATTGGGTCCTCGATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGTTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCATATCACATCAGAACCTCATAACAGGCCACCGAGTGGTTCACTTTTTCTTTTCGATCGGAAGGTTTTGAGATACTTTAGAAAGGATGGTCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAGAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAACATTTTCAAAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCACTACTTGGAAGTTAAGGGTAACAAGTCAAATGTTGGAGGAAATACTGACAGTGATGAGGTGGTCAACTCTCCATCGTCTGGCTTTCCCATAAATTATAGCAATGTGCCTTCACTCAGTACAGATTCCATGAGCCCAACTTGCAGTTTGACATCTTTACGTGAGGATGCCGATTCTGGTGATCATGGACAGTCATCATTTTCTGGAACGGATTATATCCCAGTTTTTGATGGGGATAAATTTAGAGGAAATGATACTACTTGTATTGATGGCCTGGAAGCACATGACATGGCATCATGGGACACTGGCTTGCAATGCACTGCCGATTTGCATACTAATCCTTCTCTTGTACCATTTCCATCCATCCCATCTGGTTCAACGGGAAACATCCTTGAACAAAAACAGAACATTTTGGGTGACTTTTTAATGAGCAAAAGTGGCCTCACTGATGAAGCAGGGAGCTCTCAGCCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACACCGCAGGACACATGGTGACCATAACCCAACCATCGAGTTTGGAATTTGAATCTGATTATGGCACTGGTTTACTGGGGAATGAAGCTCATAAGGAAGGTTCTGAAGTTTCTTCTGTCCTGTTTAATTTTCATGGTGAGCCAAAAGAGCAGCTTGTGCAGCAAAACTATCCAGAACAGCATGTAGATGGACAACCTCAACATGCACTAAAGTCGAATTCTGCAAATAAAGTTCCCATTGAAGAAACTATCAACTATCCCTTAACTGTGAGGCGTTCATTATTGGATAGTGATGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAAGAACTCGGAGAGGTGGATGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGTGGGCATGTTATAGATGATACCTCATTGAGCCCATCTCTCTCTCAGGACCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCACAAACTGAGGTGTTGATCATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAACCTGTCACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCGCCTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTACAGAGAGAGCTTTTCTGGAAATGTAGATTTTGCAGATTTTTTCAACATTACAAATGATATGCTGTTTCATTTGCGACTGGAGGAGTTTCTTTCTATAAAGCCAGTGAACGCTTCAAATCAAAACCTTGAGGGTGATATGGAGAAAAGAAACTTAATTTTTAAGCTTATTTCACTGAGAGAGGAAGAGGAATATTCGAGTAAGGAAGAGTCTACTATAGAGATGGATATATCACAACACAAGGTGAAAGAGCATCTGTTTCACAGGCAGGTTAAAGAGAAGCTCTACTCATGGCTTCTTCACAAAGTAACTGAGAGTGGTAAAGGACCAAATGTATTAGATAAGAATGGGCAGGGTGTGCTACATTTGGCAGCTGTTCTTGGTTATGATTGGGCCATAACCCCTATTTTAACTGCTGGAGTTAATATCAACTTCCGTGATGTAAATGGATGGACAGCTTTACATTGGGCTGCATCCTGTGGCAGAGAGCGGACAGTTGCTGCCCTTGTCTCCATGGGTGCAGAGTCTGGAGCATCGACAGATCCATCTCCAGCATTTCCTTCGGGCAGAACACCTGCAGATCTTGCCTCAAGCAATGGGCACAAAGGAATCTCTGGTTTTCTTGCGGAGTCTTCATTAACTAGTCACCTTAAATCCCTCACAATGGATGATCAACATAAAGGTGGTCAGCAAGAAATTTCGGGGATAAAAGTGGTGCAGACAGTTTCAGAACGAACTGCAACGCCTGTGCTCTATAATTATACGCCAGATGCCCTCTGCCTTCAGGATTCTCTTACTGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATACAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGTATGATGAGGATGAGTTTGGATTGTCAGATCAGCGAGCTCTTTCCCTTTTAGCTTCTAAGGCAGGCAAATCTGGACAAGGAGATGGTTTAGCCCATTCTGCTGCAACACAGATACAGAAAAAGTTTCGAGGTTGGAAGAAGAGAAAAGAATTCTTGTTCATTCGTCAAAGAATTGTCAAAATCCAGGCCCATGTAAGAGGCCACCAGGTAAGGAAGCAGTATAAAAGTGTCATTTGGTCTGTGGGAATCCTGGAGAAGGTCATATTACGCTGGAGACGTAAGGGTAGTGGTTTACGTGGATTTCGACCAGATGCCCTTAATAAAGTTCCGAGCCAGCAAAATGATTCTCAGAAGGAAGATGATTATGATTATCTTAAAGAAGGACGGAAACAAAGTGAGGAAAAGTTCCAAAAGGCCCTTTCAAGGGTGAAGTCCATGGTTCGGTATCCAGAGGCTCGGGCCCAATATCGGCGTTTGCTAAATGTTGTTGAAGACATCCGTCAAACCAAGGCATGTAATATGAGTTTGATCAATTCTGAAGAGACAGTTGATAGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTTATTCCTATAGCATTTGATTGA 3123 0.4214 MAESASSYGLGPRLDIQQLQFEAQHRWLRPAEICEILRNYRMFHITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENEHFQRRSYWMLEPDMMHIVFVHYLEVKGNKSNVGGNTDSDEVVNSPSSGFPINYSNVPSLSTDSMSPTCSLTSLREDADSGDHGQSSFSGTDYIPVFDGDKFRGNDTTCIDGLEAHDMASWDTGLQCTADLHTNPSLVPFPSIPSGSTGNILEQKQNILGDFLMSKSGLTDEAGSSQPLQSNWQIPFEDTAGHMVTITQPSSLEFESDYGTGLLGNEAHKEGSEVSSVLFNFHGEPKEQLVQQNYPEQHVDGQPQHALKSNSANKVPIEETINYPLTVRRSLLDSDESLKKVDSFSRWITKELGEVDDLNMQSSPGISWSTDECGHVIDDTSLSPSLSQDQLFSINDFSPKWAYAESQTEVLIIGSFLKSQPEVTTCHWSCMFGEVEVPAEVLANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDYRESFSGNVDFADFFNITNDMLFHLRLEEFLSIKPVNASNQNLEGDMEKRNLIFKLISLREEEEYSSKEESTIEMDISQHKVKEHLFHRQVKEKLYSWLLHKVTESGKGPNVLDKNGQGVLHLAAVLGYDWAITPILTAGVNINFRDVNGWTALHWAASCGRERTVAALVSMGAESGASTDPSPAFPSGRTPADLASSNGHKGISGFLAESSLTSHLKSLTMDDQHKGGQQEISGIKVVQTVSERTATPVLYNYTPDALCLQDSLTAVRNATQAADRIHQVYRMQSFQRKQLTQYDEDEFGLSDQRALSLLASKAGKSGQGDGLAHSAATQIQKKFRGWKKRKEFLFIRQRIVKIQAHVRGHQVRKQYKSVIWSVGILEKVILRWRRKGSGLRGFRPDALNKVPSQQNDSQKEDDYDYLKEGRKQSEEKFQKALSRVKSMVRYPEARAQYRRLLNVVEDIRQTKACNMSLINSEETVDSVEDLIDIDMLLDDDNFIPIAFD* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00271 1040 Gene3D - 864 910 - -
Rops11g00271 1040 ProSiteProfiles Ankyrin repeat region circular profile. 688 714 - -
Rops11g00271 1040 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Rops11g00271 1040 Gene3D - 619 766 IPR036770 -
Rops11g00271 1040 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 1002 - -
Rops11g00271 1040 SUPERFAMILY Ankyrin repeat 643 749 IPR036770 -
Rops11g00271 1040 MobiDBLite consensus disorder prediction 935 955 - -
Rops11g00271 1040 FunFam Calmodulin-binding transcription activator 2 448 545 - -
Rops11g00271 1040 ProSiteProfiles Ankyrin repeat profile. 655 687 IPR002110 GO:0005515
Rops11g00271 1040 Gene3D Immunoglobulins 448 544 IPR013783 -
Rops11g00271 1040 ProSiteProfiles Ankyrin repeat profile. 688 720 IPR002110 GO:0005515
Rops11g00271 1040 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Rops11g00271 1040 SUPERFAMILY E set domains 455 541 IPR014756 -
Rops11g00271 1040 FunFam Calmodulin-binding transcription activator 2 863 911 - -
Rops11g00271 1040 Pfam IQ calmodulin-binding motif 889 908 IPR000048 GO:0005515
Rops11g00271 1040 Pfam IQ calmodulin-binding motif 865 884 IPR000048 GO:0005515
Rops11g00271 1040 Pfam Ankyrin repeats (3 copies) 660 750 IPR002110 GO:0005515
Rops11g00271 1040 SMART iq_5 886 908 IPR000048 GO:0005515
Rops11g00271 1040 SMART iq_5 863 885 IPR000048 GO:0005515
Rops11g00271 1040 MobiDBLite consensus disorder prediction 714 737 - -
Rops11g00271 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 864 913 IPR027417 -
Rops11g00271 1040 ProSiteProfiles IQ motif profile. 887 911 IPR000048 GO:0005515
Rops11g00271 1040 Pfam IPT/TIG domain 455 533 IPR002909 -
Rops11g00271 1040 SMART CG_1_2 19 137 IPR005559 GO:0003677
Rops11g00271 1040 ProSiteProfiles IQ motif profile. 864 893 IPR000048 GO:0005515
Rops11g00271 1040 SMART ANK_2a 727 756 IPR002110 GO:0005515
Rops11g00271 1040 SMART ANK_2a 688 717 IPR002110 GO:0005515
Rops11g00271 1040 SMART ANK_2a 655 684 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00271 Rops-Chr11 3707135 3718409 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00271 7 1021 CAMTA Transcription Factor Family AT5G64220 52.264 0.0 1041
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Rops11g00271 CG-1 2.6e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00271 K21596 - gmx:100818124 1673.29