Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00252 ATGGGTGTTTTATCATTAAGCTCAAGCCTTAGCATTTCCAAACCAATTCATTTCCTTCCACTCTCAAATAAACACCAAAGATGTCGTTTGGAGTTTTCAGTTTCATGCAGAGCCACAAAGCTTCCGGTTGTGGATGAAACCAACCACGGCAACTTCTATAAGATACTGTCTTTGAGTCCCAATAGTGCAACCATGGATGACATAAAGAGAGCATATAGATCAATGGCACTTCGGTACCATCCTGATGTGTGCCATGATGGTTTCAAGAAAGCGGAATCAACGAGGATGTTTGTTCAACTCAATGCAGCTTACAGGACGCTGTCAAATCCCATTCTTCGAGCTGAGTATGACTATGAATTGGGTTTGAGAAACAAAACGGGTGTTAGTGATGCGAGATGGAGATGTAGGTGGCAGGAGCAAGTGGTTGAGTTGAAAAGAAGGTCTCATAGACGTATGGCACAAAAGGAGGGATCATGGGGCAGTAGAATGAGGGCGCAAAACATGAAGAAAGATCACAACTAA 522 0.431 MGVLSLSSSLSISKPIHFLPLSNKHQRCRLEFSVSCRATKLPVVDETNHGNFYKILSLSPNSATMDDIKRAYRSMALRYHPDVCHDGFKKAESTRMFVQLNAAYRTLSNPILRAEYDYELGLRNKTGVSDARWRCRWQEQVVELKRRSHRRMAQKEGSWGSRMRAQNMKKDHN* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00252 173 CDD DnaJ 51 109 IPR001623 -
Rops11g00252 173 ProSiteProfiles dnaJ domain profile. 51 120 IPR001623 -
Rops11g00252 173 SMART dnaj_3 50 112 IPR001623 -
Rops11g00252 173 MobiDBLite consensus disorder prediction 148 173 - -
Rops11g00252 173 SUPERFAMILY Chaperone J-domain 47 120 IPR036869 -
Rops11g00252 173 Pfam DnaJ domain 51 117 IPR001623 -
Rops11g00252 173 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 25 170 - -
Rops11g00252 173 PRINTS DnaJ domain signature 54 72 IPR001623 -
Rops11g00252 173 PRINTS DnaJ domain signature 72 87 IPR001623 -
Rops11g00252 173 PRINTS DnaJ domain signature 92 112 IPR001623 -
Rops11g00252 173 Gene3D DnaJ domain 43 155 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00252 Rops-Chr11 3429029 3429686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00252 53 117 C2H2 Transcription Factor Family AT1G74250 41.791 4.58e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00252 - - gmx:100783590 202.986