Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00237 ATGGAGCGAGTGACTTCATCTTTTGTGGCTTCCTTTTTTGTTTGGGCAATTTTGGTGCTTAAGGCTTCTGGAAATCCTGAAGGTGATGCCTTGATTGTATTGAAGGACAGGTTGCTTGATCCTAAAAATGCTCTTCAAAAATGGGATGCTACCCTTGTCAGTCCCTGCACGTGGGCTCATGTTACATGCAATGTTGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCAGACCTTTCTGGTCAACTGGGTCCAGAACTTGGTCAGCTCTCAAACTTGCAGTACTTGGAACTTCATAGTAATAATATAACTGGAAGAATCCCGGATGTGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTCCTTGAACAATTTAACTGGTACCATACCGAATACATTGGGCAACCTTGGAAAACTACAATTCCTGCGTCTGAATAATAACAGCTTATCTGGAGGCATTCCCATGTCTTTGACAAACATTTCTTCACTGCAATTTCTTGACCTCTCAAACAACCAGCTAAAAGGAGAAATCCCAGTGAATGGTTCATTTTCATTATTTACCTTCATCAGTTATCAAAATAATCGTGACTTAATAAAACCAAAAACCACTCCATCTCCACCGTCACAAGCTTCTTCAGGTAACGTTAATACTGGAGCTATTGCTGGAGGAGTGGCTATCGGTGCTGCTATGTTGTTTGCAACCCCTGCAATTGTTATTGTTTATTGGCGAAGAAGGAAAGTACAGGATCATTTCTTTGATGTTCCTGCTGAGGGGGATCCTGAAGTTTGCCTTGGTCAGCTGAATAGGTTTTCATTACGTGAGCTGCAAGTTGCAACAGATAACTTTAATAACAAACACATTCTAGGTAAAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGTCGATGGCTCTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCATGCAGAGTGGGGAGCTGCAATTTCAAACAGAAGTGGAAATGATCAGCACGGCTCTGCATCGCAATTTGCTTCGACTTTGTGGTTTTTGCATGACAACTACTGAACGGTTGCTTGTGTATCCTTTCATGGTTAACGGAAGTGTAGCATCATGTTTACGAGAACGTCGTGAATCTCAACCACCACTTGACTGGTCAATACGGAAACGTATTGCACTAGGAGCTGCCAGGGGACTTACTTATTTGCATCATCATTGTGACCCTAAGATTATTCATCGTGACGTCAAAGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTGGCAAAACTTATGAGTTACAAAGATACTCATGTTACCACTGCTGTATGTGGTACGATGGGGCATATAGCACCAGAGTACTTGTCAACCGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGCATGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTAGCACGACTTGCCAGTAATGATGATGTGATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAAGAAGCTAGAAACACTGGTAGATGCAGATTTACAGGGCAATTATATTGTTGATGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGCTCCCCCATGGAAAGACCCAAGATGTCTGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAAAAATGGGAGCAATGGCAGAAAGAGGAGATGTTTAGGCAAGACTGTCACAATAACAACATGCATCACCCTAATGCAAATTGGATAATAGACTCACCTTCAAAAATCCAGCCAGATGTACTATCAGGTCCTAGATGA 1830 0.418 MERVTSSFVASFFVWAILVLKASGNPEGDALIVLKDRLLDPKNALQKWDATLVSPCTWAHVTCNVDNSVTRVDLGNADLSGQLGPELGQLSNLQYLELHSNNITGRIPDVLGNLTNLVSLDLSLNNLTGTIPNTLGNLGKLQFLRLNNNSLSGGIPMSLTNISSLQFLDLSNNQLKGEIPVNGSFSLFTFISYQNNRDLIKPKTTPSPPSQASSGNVNTGAIAGGVAIGAAMLFATPAIVIVYWRRRKVQDHFFDVPAEGDPEVCLGQLNRFSLRELQVATDNFNNKHILGKGGFGKVYKGRLVDGSLVAVKRLKEERMQSGELQFQTEVEMISTALHRNLLRLCGFCMTTTERLLVYPFMVNGSVASCLRERRESQPPLDWSIRKRIALGAARGLTYLHHHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMSYKDTHVTTAVCGTMGHIAPEYLSTGKSSEKTDVFGYGMMLLELITGQRAFDLARLASNDDVMLLDWVKGLLKDKKLETLVDADLQGNYIVDEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDCHNNNMHHPNANWIIDSPSKIQPDVLSGPR* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00237 609 SUPERFAMILY Protein kinase-like (PK-like) 264 559 IPR011009 -
Rops11g00237 609 FunFam Somatic embryogenesis receptor kinase 1 253 360 - -
Rops11g00237 609 Gene3D Transferase(Phosphotransferase) domain 1 361 578 - -
Rops11g00237 609 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 569 - -
Rops11g00237 609 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Rops11g00237 609 SMART serkin_6 284 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00237 609 Gene3D Phosphorylase Kinase; domain 1 253 360 - -
Rops11g00237 609 SMART LRR_typ_2 90 113 IPR003591 -
Rops11g00237 609 SMART LRR_typ_2 162 187 IPR003591 -
Rops11g00237 609 SMART LRR_typ_2 114 138 IPR003591 -
Rops11g00237 609 PRINTS Leucine-rich repeat signature 162 175 - -
Rops11g00237 609 PRINTS Leucine-rich repeat signature 117 130 - -
Rops11g00237 609 Pfam Leucine rich repeat 91 151 IPR001611 GO:0005515
Rops11g00237 609 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Rops11g00237 609 FunFam Somatic embryogenesis receptor kinase 1 23 210 - -
Rops11g00237 609 SUPERFAMILY L domain-like 27 194 - -
Rops11g00237 609 Gene3D Ribonuclease Inhibitor 24 207 IPR032675 -
Rops11g00237 609 ProSiteProfiles Protein kinase domain profile. 284 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00237 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Rops11g00237 609 FunFam Somatic embryogenesis receptor-like kinase 1 361 578 - -
Rops11g00237 609 Pfam Protein kinase domain 285 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00237 Rops-Chr11 3245445 3266630 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00237 13 609 Receptor kinase-like Gene Family AT4G33430 71.713 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Rops11g00237 Pkinase 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00237 K13416 - gmx:100800522 985.711