LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g00233	ATGGGAGATAACAAAGTCAATCTTCCACCCGGGTTTCGGTTTTATCCCACAGATGAAGAGCTTGTAATTCATTTCCTTCAGAGAAAGGCAGCACTTTTACCTTGCCACCCTGATGTCATCCCTGATCTTGAGCTCTACTCATATGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGAAACCAATGGTATTACTATAGCAGAAGGACACAAAACAGGGTCACTGGTAATGGGTATTGGAAGCCAACAGGAATGGAAGAACCAGTGGTTACTAGCACAAACAACAAGAGAGTTGGCATGAAGAAATATTTTGTGTTCCATTTGGGAGAAGCCTCTGCTGGTATCAAAACCAATTGGATAATGCAAGAATATCGCCTATCAGATTCTGCTTCCTCTAGCAGATCATCATCCAAAAGAAAATCACAACCAAAAACAGATTATAATAAATGGGTGATATGTCGTGTTTATGAGCGGAATGGAGATGGTGATGATGGAACAGAGCTCTCGTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAATAAGCTTACCGAATTAG	570	0.4123	MGDNKVNLPPGFRFYPTDEELVIHFLQRKAALLPCHPDVIPDLELYSYDPWELDGRALAEGNQWYYYSRRTQNRVTGNGYWKPTGMEEPVVTSTNNKRVGMKKYFVFHLGEASAGIKTNWIMQEYRLSDSASSSRSSSKRKSQPKTDYNKWVICRVYERNGDGDDGTELSCLDEVFLSLDDLDEISLPN*	190

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g00233	189	ProSiteProfiles	NAC domain profile.	8	159	IPR003441	GO:0003677\|GO:0006355
	Rops11g00233	189	Gene3D	NAC domain	17	162	IPR036093	GO:0003677\|GO:0006355
	Rops11g00233	189	PANTHER	NAC TRANSCRIPTION FACTOR 56	8	163	-	-
	Rops11g00233	189	SUPERFAMILY	NAC domain	5	158	IPR036093	GO:0003677\|GO:0006355
	Rops11g00233	189	Pfam	No apical meristem (NAM) protein	9	127	IPR003441	GO:0003677\|GO:0006355
	Rops11g00233	189	FunFam	NAC domain-containing protein 104	17	162	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g00233	Rops-Chr11	3200915	3201947	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g00233	1	174	NAC Transcription Factor Family	AT1G61110	40.625	2.79e-45	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Rops11g00233		NAM	1.3e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g00233	-		-	gmx:100170712	348.977