Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00219 ATGGTTTGGGCTCTTCACCCAAACCGGGATATCCTGTCTTGCTTGAACTTTGAGGGTGTTCCTCTCCCTTCATTGAATATAAAGCTTCTTCTCTCTCACCCTTTTCTCCAAACACTTCCCTTTGCTGCTGCTGCTGCTGCCGTCGCTGCTCCACCACCGAACCATTTACCCTGCAAATCGTGTTTTGTTCAAAGAAGGTTTAAAAAGATGACTGATGCTGAGGACATTCAACCACTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGTTTTGCAGGAGATGATGCTCCTAGGGCCGTGTTCCCCAGTATTATCGGTAGACCACGTCATACTGGAGTAATGGTTGGAATGGGGCAGAAGGATGCTTATGTGGGTGATGAAGCCCAGTCAAAAAGGGGTATACTCACCTTGAAGTACCCTATAGAGCATGGCATAGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTTTACAATGAGCTTCGTGTAGCTCCTGAAGAACACCCTGTGCTTCTTACCGAGGCACCACTCAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTCGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGATATGCTCTTCCTCATGCAATTCTACGTTTGGACCTTGCTGGCCGTGATTTAACAGAGTACTTGGTGAAAATCCTTACTGAGAGAGGATACTCCTTCAGTACCTCTGCTGAAAAGGAAATTGTCCGTGATGTGAAGGAGAAACTAGCATATGTGGCCCTTGATTTTGAACAAGAAATGGAGACTACTAAGAGTAGTTCTGCAGTGGAGAAGAGCTATGAATTGCCTGATGGACAGGTCATTACTATAGGTGCTGAGAGATTCCGGTGCCCAGAAGTTCTCTTCCAGCCTTCTCTAATTGGTATGGAAGCTCCTGGAATTCATGAAACCACATACAACTCTATCATGAAATGCGATGTTGATATTAGGAAGGATCTGTATGGAAATATCGTGCTTAGTGGTGGGTCTACTATGTTTCCTGGAATTGCGGATCGCATGAGCAAGGAAATTAGTGCTCTTGCTCCAAGCAGCATGAAAATCAAGGTGGTTGCACCTCCTGAAAGGAAGTACAGTGTCTGGATTGGTGGTTCCATCTTGGCATCACTTAGCACCTTCCAACAGATGTGGATCTCTAAGGGTGAATATGATGAATCTGGGCCAGCTATCGTTCACCGAAAGTGCTTCTAA 1341 0.4564 MVWALHPNRDILSCLNFEGVPLPSLNIKLLLSHPFLQTLPFAAAAAAVAAPPPNHLPCKSCFVQRRFKKMTDAEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLVKILTERGYSFSTSAEKEIVRDVKEKLAYVALDFEQEMETTKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00219 446 Gene3D Actin; Chain A, domain 4 251 342 - -
Rops11g00219 446 SUPERFAMILY Actin-like ATPase domain 218 446 IPR043129 -
Rops11g00219 446 Pfam Actin 74 446 IPR004000 -
Rops11g00219 446 Gene3D - 209 409 - -
Rops11g00219 446 Gene3D - 79 440 - -
Rops11g00219 446 CDD NBD_sugar-kinase_HSP70_actin 79 252 - -
Rops11g00219 446 FunFam Actin, muscle 251 342 - -
Rops11g00219 446 FunFam Actin, alpha skeletal muscle 324 399 - -
Rops11g00219 446 SUPERFAMILY Actin-like ATPase domain 75 224 IPR043129 -
Rops11g00219 446 FunFam Actin, alpha skeletal muscle 72 230 - -
Rops11g00219 446 ProSitePatterns Actins signature 1. 124 134 IPR004001 -
Rops11g00219 446 PRINTS Actin signature 132 154 IPR004000 -
Rops11g00219 446 PRINTS Actin signature 120 131 IPR004000 -
Rops11g00219 446 PRINTS Actin signature 186 199 IPR004000 -
Rops11g00219 446 PRINTS Actin signature 97 106 IPR004000 -
Rops11g00219 446 PRINTS Actin signature 211 230 IPR004000 -
Rops11g00219 446 PRINTS Actin signature 307 323 IPR004000 -
Rops11g00219 446 PANTHER ACTIN 78 439 IPR004000 -
Rops11g00219 446 ProSitePatterns Actins signature 2. 427 435 IPR004001 -
Rops11g00219 446 ProSitePatterns Actins and actin-related proteins signature. 175 187 IPR020902 -
Rops11g00219 446 FunFam Actin, alpha skeletal muscle 400 446 - -
Rops11g00219 446 SMART actin_3 76 446 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00219 Rops-Chr11 3003377 3013306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00219 70 446 Cytoskeleton Gene Families AT5G09810 94.695 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00219 K10355 - gmx:100778206 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00219 11 3003377 3013306 Rops11g00219 11 3003377 3013306 ECH