LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g00196	ATGGAAATTGGTCTCTCTCTGCAGATAGCTGCCAAACAAGAAGAAGAAGAAGCAAAGATAGATAGAGGAGAAGAGAATGACAAGGAAGAAATGACACGGATGAAGTTTAAAGAAGAAGCTAATGATGTCACAGCTGGCGAAATAGAAGATGATGCAGCAGTGGCCGGAGTAGTAGCATTGCAAGAGAACAATAATTCTAGAGAGAAGTCATTAAAGGGTATGGTTTACAATCAGTTGAGTGTTTTGCAAATGGAAATGGATCGCGTGAAAGAGGAAAACAAAGCTCTGATGAAAGCGATGGAGCAAACAATGAAAGACTACTGTGATCTGCAAATAAAATTTGCAGTTATTCAAGAGAACAATAAGAAAAAGGATCATCAAATTTCTCTCTCACTTCAAGACAACGCAAACACTATAAGTGAAGGACCACCAACAATCCCTGAGATCTTCGATCACAAAATCCAAGCATCTCCATCCCCAAGAAAAACTGATGATATTATTAGTGAGAATCAATTGAGCTTATCTCTAAGGTTGCAGACTAGCTCAACAAGTGAGCAAGAAAGGGAGGTAGATAAAGAAGACCATAAGGAAGAAGAACCTTCAAGTTTTGCATCAATGCAGAAGAAGTTACCGTGTATTCATGACTTGCCTGGTATTACTATGCATGCTGCCTCCCCTCCAAATAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAAGAAACCAAAGTGCAAAGAAGCTTACATGACAAGTCCATACTAATCACTACCTATGAAGGAACACATAACCATCCACTCCCTGTAGGTGCAATTGCTATGGCTTCTGCAGCAGCTTCCTTGATTTCAGATGGCACATGCAGTTTCAACCAAGCATCCCTTCCTTACCCTTTAAATCAACCTTCCATTATTAGAAGAAGCATAAACCCTAATGACCCCTCCAAAGGGATAGTTCCTGATCTCACTCATAATCTCAATGCTAGCTCCTCCAATGCTTCAGTGCAACCACATTTTCCTTGGATGCAAAACAAACACCAGAGTGGTAATGCTATTGCGGTGAACAACTTTCACAGCCTCATTAGACCAGTGAATCATGAGAGGGCTCGGAAAGCAGAAGAACCTAAAATGGTAGCTGATAATCTGTCTGCAATAATTGCCTCGGATCCTAAGTTCAGGGTTGCTGTTGCAGCGGCCATAACATCACTCTTCAATAAAGAAAGCCACACAACTCATCATGTAGGGACACCTTTTGGTCCAAAGAGTGGGCAAAATGGTAGCTCTAGCAGCAACAATTGGATCATAGAATCTCTCTCAAGAAATGGTAAGCCTATTTGA	1332	0.4122	MEIGLSLQIAAKQEEEEAKIDRGEENDKEEMTRMKFKEEANDVTAGEIEDDAAVAGVVALQENNNSREKSLKGMVYNQLSVLQMEMDRVKEENKALMKAMEQTMKDYCDLQIKFAVIQENNKKKDHQISLSLQDNANTISEGPPTIPEIFDHKIQASPSPRKTDDIISENQLSLSLRLQTSSTSEQEREVDKEDHKEEEPSSFASMQKKLPCIHDLPGITMHAASPPNRKARVSVRARCEETKVQRSLHDKSILITTYEGTHNHPLPVGAIAMASAAASLISDGTCSFNQASLPYPLNQPSIIRRSINPNDPSKGIVPDLTHNLNASSSNASVQPHFPWMQNKHQSGNAIAVNNFHSLIRPVNHERARKAEEPKMVADNLSAIIASDPKFRVAVAAAITSLFNKESHTTHHVGTPFGPKSGQNGSSSSNNWIIESLSRNGKPI*	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g00196	443	ProSiteProfiles	WRKY domain profile.	227	267	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Rops11g00196	443	MobiDBLite	consensus disorder prediction	184	203	-	-
	Rops11g00196	443	MobiDBLite	consensus disorder prediction	1	32	-	-
	Rops11g00196	443	MobiDBLite	consensus disorder prediction	12	32	-	-
	Rops11g00196	443	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	62	241	IPR044810	GO:0003700
	Rops11g00196	443	MobiDBLite	consensus disorder prediction	406	443	-	-
	Rops11g00196	443	MobiDBLite	consensus disorder prediction	177	207	-	-
	Rops11g00196	443	Coils	Coil	79	106	-	-
	Rops11g00196	443	Gene3D	WRKY domain	218	268	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g00196	Rops-Chr11	2646786	2650097	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g00196	82	315	WRKY Transcription Factor Family	AT1G68150	33.218	1.61e-27	111

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Rops11g00196		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g00196	-		-	gmx:100820209	378.637