Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00186 ATGCCAAAGTCAAAGCGAAATAGACAAGTTACCCTGTCGAAGACAAAGAAAAAGGGAAGGGATCATAAAGAGGTGATAGTGAACGCAATAAAAGAGGCAGCGGAAAAGTACAGTTCGGTTTACGTGTTCTCTTTCGAGAACATGAGGAATCAGAAACTCAAGGAGTTTAGGGAACAACTAAAATCAAGTAGCAGGTTCTTTCTTGGTTCAAACAAAGTAATGCAAGTTGCTCTTGGTCGTTCTGCTGCTGATGAGATCAGACCAGGCCTTCATAAGGTTTCAAAGCTATTGCGTGGAGATGCTGGGATGTTTTTCACGAATTTATCTAAAGAAGAAGTTGAAAGGCTGTTCAATGGGTTTGAGGAATATGACTTTGCAAGAACAGGAAGCATTGCCACTGAGAAGGTGGATCTCAAAGAGGGTCCTTTAGAGCAGTTCACACATGAGATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGAGTTGTGGAGCTTGTTGCCGATTTCGTTGTTTGTGAGGAGGGAAAGCCCTTGTCACCCGAGGCAGCTCGCATACTGCGTTTGCTGGGAATCAAGATGGCTACATTTCGACTTAACCTGGTTTGCAGGTGGAGTCCCGATGATTTTGAACTTTACATTGATGGACCTGGTGATTCAGATGTGGAATGCTCATAG 690 0.4391 MPKSKRNRQVTLSKTKKKGRDHKEVIVNAIKEAAEKYSSVYVFSFENMRNQKLKEFREQLKSSSRFFLGSNKVMQVALGRSAADEIRPGLHKVSKLLRGDAGMFFTNLSKEEVERLFNGFEEYDFARTGSIATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVADFVVCEEGKPLSPEAARILRLLGIKMATFRLNLVCRWSPDDFELYIDGPGDSDVECS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00186 229 Pfam Ribosomal protein L10 19 120 IPR001790 -
Rops11g00186 229 Gene3D - 30 211 IPR043141 -
Rops11g00186 229 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Rops11g00186 229 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
Rops11g00186 229 CDD Ribosomal_P0_like 21 184 IPR033867 GO:0000027
Rops11g00186 229 FunFam Ribosome assembly factor mrt4 29 131 - -
Rops11g00186 229 FunFam Ribosome assembly factor mrt4 125 198 - -
Rops11g00186 229 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 220 - -
Rops11g00186 229 Gene3D - 125 198 IPR043164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00186 Rops-Chr11 2485456 2487933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00186 35 217 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 22.404 1.18e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00186 K14815 - gmx:100500064 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00186 11 2485456 2487933 Rops11g00186 11 2485456 2487933 ECH