Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00183 ATGGCGAAGAAGGGTCCATGTTTGCATTGCGGAATTAATTCTACACCACTTTGGCGTAATGGACCAGCTGAGAAGCCAGTATTGTGTAACGCTTGTGGATCACGATTCAAGTCGAAAGGAACTCTTAAGAACTACCTCCCCAACAATGTCCAATTTCGGTTATTAAACCTCAAAAAAGTATATGGTAGAAGAAGAAACCTCAATATTACAGGTAGGATAAAACCAAATTTATGGAACTTCAAAATCCCTACAAGGAGACGGTCACTGGTGGTGTACAAGCGAATGGCACTAATGGAGAAGTTTCAAAAGCAGCTTTTCAGCTTGTGGAGATATCAAAGGCCACCAAATGAATCATCCCCAAACGAGATCTTATTGTTGGATAACGTGAACAACTTCATACCCAAAAATGAGATAGGCCTTGGAGTTATTCTTCTTGAGACAGATGGCAGTACTTCTAAAGATCAGGAATCATCCACATGCACTTCAACTTCAACAGATAATCAAGTGAAATGA 513 0.4016 MAKKGPCLHCGINSTPLWRNGPAEKPVLCNACGSRFKSKGTLKNYLPNNVQFRLLNLKKVYGRRRNLNITGRIKPNLWNFKIPTRRRSLVVYKRMALMEKFQKQLFSLWRYQRPPNESSPNEILLLDNVNNFIPKNEIGLGVILLETDGSTSKDQESSTCTSTSTDNQVK* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00183 170 PANTHER OSJNBB0038F03.10 PROTEIN 7 50 IPR044589 -
Rops11g00183 170 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Rops11g00183 170 MobiDBLite consensus disorder prediction 150 170 - -
Rops11g00183 170 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Rops11g00183 170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Rops11g00183 170 ProSiteProfiles GATA-type zinc finger domain profile. 7 43 IPR000679 GO:0006355|GO:0043565
Rops11g00183 170 Gene3D - 3 90 IPR013088 GO:0006355|GO:0008270
Rops11g00183 170 CDD ZnF_GATA 6 43 IPR000679 GO:0006355|GO:0043565
Rops11g00183 170 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00183 Rops-Chr11 2445928 2451246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00183 1 159 C2C2-Gata Transcription Factor Family AT5G47140 30.233 8.20e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops11g00183 GATA 2.8e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00183 - - ccaj:109803880 160.229