Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00173 ATGTCTCTAACAGGCCGTCCTCGTATTGTTGTCAATGGAGTTCGTAGAACGAGAACCTTTCATTATTTCTGGTGCCTAAGTTGTCAACGTACTGTGAGGATACCCTCTACAAATACACATGACATTTTTTGCCCCTATTGTTTCCATCAACTGCGTTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACGTGCCTAATAACTTGGAACCTTCACCTGCTACTCAATTAATGCATAGCTTGGCTTTCCTTCTTGATCCATCTCATAGAAGGCAAAACAACCGTTTGAATACAATACCACATTGGGAAACAGAAGATGATGAAGATAGTCAAAATCCACAGGCTTGGATTAGCCTCAGATTTGTGAGACCAAGTGATCAACCTAGGCCTATTGCCCCACCAGAAAACTTGGTTCCCGGGTTCAATGACACAGGCAATGATAACACATTAGGTGACTTCATTGATGGGGTGATTCAGAACAATCGAGTGGGGCCACCTCCAGCATCATCTTCAGCCATTGCAGCATTGCCAATGGTGAAACTGACACAAGCCCATTTGGCAAGTGACCCCAATTGTCCAATTTGCAAAGATGAGTTTCAGCTTGATGAGGAAGTGAGAGAGTTGCCATGCAAGCATTTCTACCATTCTGATTGCATTCTCCCTTGGCTTTGCATGCACAACACTTGCCCTGTCTGCCGCTATGAGCTACAAGGTGTTGCTAGTACCAATTACCTTTTCCAAAATGAGAATGATCAGATGTTTGGGTTTGAGGATGTTACAAGCAGCTTAAACTGGATTTGGGGCCAGTTCACTTCCTTCAGGCCTATTCGTGCAGTCCTAGATTGGACACAATCCTACTTTAATTTCCAAGAAAATCATGTTCGTGGTAGCAGAGGTAGCTCTTGGTGGCGAGCATTACTCATTTTATAG 933 0.4384 MSLTGRPRIVVNGVRRTRTFHYFWCLSCQRTVRIPSTNTHDIFCPYCFHQLRYELDISRPRLLMNVPNNLEPSPATQLMHSLAFLLDPSHRRQNNRLNTIPHWETEDDEDSQNPQAWISLRFVRPSDQPRPIAPPENLVPGFNDTGNDNTLGDFIDGVIQNNRVGPPPASSSAIAALPMVKLTQAHLASDPNCPICKDEFQLDEEVRELPCKHFYHSDCILPWLCMHNTCPVCRYELQGVASTNYLFQNENDQMFGFEDVTSSLNWIWGQFTSFRPIRAVLDWTQSYFNFQENHVRGSRGSSWWRALLIL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00173 310 SUPERFAMILY RING/U-box 173 238 - -
Rops11g00173 310 Pfam Ring finger domain 192 234 IPR001841 -
Rops11g00173 310 FunFam E3 ubiquitin-protein ligase RING1-like 157 240 - -
Rops11g00173 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 105 237 - -
Rops11g00173 310 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Rops11g00173 310 SMART ring_2 193 233 IPR001841 -
Rops11g00173 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Rops11g00173 310 CDD RING-H2_RNF126-like 192 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00173 Rops-Chr11 2342797 2344659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00173 1 291 C3H Transcription Factor Family AT1G68180 33.220 4.90e-45 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00173 K11982 - gmx:100793656 454.521