Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00146 ATGTGTTGTTTCATTACTACGCAAATGAAGCAACGTGAAGCCAATTCAGCCAAGGGTGTTAAGTGTAGTGATAAAATTCCACAGCACAATTGGTTGCAACATGCCAATACTCATCAGAATTTCTCATGCCAGGCCAAGTTTTTGAGCTCCAATTTTCTGTTCTCTCTCCCAACTAATAAGCCTTGCTCTGAAGAACAAATCGCTGGGACTGCGGGGTTTGTAGTCCAAAAAAGTCAAAATATTCAGAGTTCACAGAGAGCACATGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTACAGAATTCTAGCAGGAACTATGTCCAACCTGGAAAAACTGTCAAAGTTACTCCTCAGCCTCATGAAGACAGGAAGATAACTTCCTTCCGAGGAAGCTGTGAAAACAACAAGCTTCACCCTAATGTTACCACAACTCCAACTGTTGTTAATCATGGTTCTCGGGTTTTGGATAGTTCAGTTAACAATCAAACAAAGTACACAGGCCAAATCAATGAGTCTACAAAATGCATGGCTGATGATTTTGATGACGACGACATACTAGGGAACATAGATGTTGACCAAATTGTGGAGAAATACCAGTCTTCTTGCACTCCCCAGCCACCAATATCCAAGCTTCCTCCTATTACACCAACTTCAGATAAAGATAATTTTGCTAGACACGGGGGTAATTTTTTGCCACCAGAGCTGTGCTTAGATTGCATCCATGGTTACAAGTTAGGGCTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAATTGAAGGATAATCTAATTGCTATCTCCAATGAACTGCTTGACAATGTTGACAACCTCAGTTCTATGCAGATATCAAAGCTTCGCCAAGACAGGTCACAGCTTAATAGCCAAATTCAGCAGCTGGAAAAATATATTCATTCCAGTAATCTTGACGAGGAAAGACAAAAGTCACATTTTTCTGCATCCACGGCACCGCCTACATCTTTTGTATATGAAACACCTCAGCAAAATTTCCTCACTAGTGGTCCAAAGAGATATGATGCCCAGGCTTATATGGGTAATGGGACATGGGGGTCATCGTTCCAGTCTCTTTCATCCTTTTCTGTAGATAAGTTTGGCATGCCATCAGGTCCAGTGGAGAGGGAAGCATTCATCCCAAAGGTTATTGAAGTTAATTACATCGAAGGTTCTGGAGACAAACGGTGGAGAAGCCAGGATTTTCCTTGGACAAAAGAATTAGAGGTTAATAATAAAAAAGTATTTGGAAATCATTCATTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACGATGAGCGGATGTGATGTTTTTGTTTTGATGCCCACCGGTGGAGGAAAGAGTCTGACCTATCAGCTACCAGCTCTTATTTGTCCTGGCATAACATTAGTAATTTGTCCACTTGTGTCTCTTATTCAAGATCAAATAATGCACCTAATGCAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGAGATCCTTAGGGAAGTTCATTCTGATTATTGTAAATACAAGTTGTTATATGTGACACCCGAAAAGGTTGCCAAAAGTGATGTTCTTCTGCGACATTTGGAAAGTTTACATGCTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAGGCTCATTGTGTCAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCCAGTGTAAAAGAAGATGTTGTACAAGCACTTGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCCGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGAAAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCGCGAATGGACTGTGAAAAGGTTGCTGACAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGCTCAACGTACCTTTGTTCAAAAGCAATGGAGCAAAGATGAGATCAATATAATTTGTGCTACTGTAGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAGTGTGGACGAGCTGGTAGAGATGGTCTACGTTCATCCTGTGTATTATATTATAGTTATAGTGATTATATACGAGTTAAGCACATGTTAAGTCAAGGAGCAATAGAGCAAAGCCCCTTGTCATCTGGATACAACCGTTTAAATATGACAAATTCAGGAAGGATACTGGAAACAAATTCTGAAAACCTTTTGCGAATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTTCAGCTTGCTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGCTTGAAGGTCAAAAGTTTCATTGAGAAGGATGTCACAGAGATTGCAAAACAATTGGTTGAACTAATTAAGCAAACGGGACAGAGGTTCTCAGCATTTCATATGTTAGAAGTGTATCGTGGTTCCTTAAGCCAGTTGGTCAAGAAACACCGGCATGAAACTGTGAGCCTTCATGGTGCTGGGAAGCGTCTAGCTAAGGGTGAGGCTTCCCGTGTATTGCATCATCTTGTTGTTGAGGATTTTCTTGTGGAGGAGGTAAAGAAAAGTGATATTTACGGATCAGTATCATCTGTATTGAAGGTAAATGAGCCCAATGTCCGTAATCTGTTGTTTGGTGGGCAGAGAATTACACTGAGATTTCCATCCTCTGTAAAGGCATCTAAGCCAGGGAAATGTGATTTAACTCCAGCTAAAGGTTGTCTGACATCTGGGAAGCTGAATCTTCCAGTAATTGACATTCCTGACGAGCCTCAAACTGAAGTGGACTTGAATCTTTCAGCTAAGTTATACTCTGCGCTACGGTTGTTGCGGACAACTCTTGTTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGTAACGCTACGTTGCAGCAGATAAGCAAGAGATTGCCGAGAACAAAGGAAGAACTTCTTGAGATAAATGGCATTAGCAAGACAAAAATAAGCAAGTACGGGGATCGGTTACTGGAAACCATTGAAAATACCATAAATGAATATTACCAGTCGACTAAAAACAGCAGCGGTAGCAAAGGCAGTGCTGATTCTACCAAAAGGAGACGAGAGGCAAATGGAGACCCACGTGCAAATGCTGAGGATGATGATGCCTTCTCCAGAAGTACTGGTCGATCAAAGAAAAGGACAGTAAAGAGACAAAATAAAAAAGCTGAGATATACGATTCTGAGGAGGAAGATTATTACAATGGATGCCTTGATGAAGGATTAGATTTTGACAACATAGAGAATGATGCATTAAATAAAATAAATTGTACAAATGCTGCAGGAAGAGTGCTACCTCAATGGACAGCATCTTGA 3525 0.4071 MCCFITTQMKQREANSAKGVKCSDKIPQHNWLQHANTHQNFSCQAKFLSSNFLFSLPTNKPCSEEQIAGTAGFVVQKSQNIQSSQRAHVEKAWLALSSLQNSSRNYVQPGKTVKVTPQPHEDRKITSFRGSCENNKLHPNVTTTPTVVNHGSRVLDSSVNNQTKYTGQINESTKCMADDFDDDDILGNIDVDQIVEKYQSSCTPQPPISKLPPITPTSDKDNFARHGGNFLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNVDNLSSMQISKLRQDRSQLNSQIQQLEKYIHSSNLDEERQKSHFSASTAPPTSFVYETPQQNFLTSGPKRYDAQAYMGNGTWGSSFQSLSSFSVDKFGMPSGPVEREAFIPKVIEVNYIEGSGDKRWRSQDFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVICPLVSLIQDQIMHLMQANIPAAYLSANMEWTEQQEILREVHSDYCKYKLLYVTPEKVAKSDVLLRHLESLHARELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVADKLQECGHKCAFYHGSMDPAQRTFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMLSQGAIEQSPLSSGYNRLNMTNSGRILETNSENLLRMVSYCENDVDCRRLLQLAHFGEKFDSSTCQKTCDNCLKVKSFIEKDVTEIAKQLVELIKQTGQRFSAFHMLEVYRGSLSQLVKKHRHETVSLHGAGKRLAKGEASRVLHHLVVEDFLVEEVKKSDIYGSVSSVLKVNEPNVRNLLFGGQRITLRFPSSVKASKPGKCDLTPAKGCLTSGKLNLPVIDIPDEPQTEVDLNLSAKLYSALRLLRTTLVREAGEGVMAYHIFGNATLQQISKRLPRTKEELLEINGISKTKISKYGDRLLETIENTINEYYQSTKNSSGSKGSADSTKRRREANGDPRANAEDDDAFSRSTGRSKKRTVKRQNKKAEIYDSEEEDYYNGCLDEGLDFDNIENDALNKINCTNAAGRVLPQWTAS* 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00146 1174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 880 IPR027417 -
Rops11g00146 1174 SMART hrdc7 991 1073 IPR002121 GO:0003676
Rops11g00146 1174 Gene3D - 614 833 IPR027417 -
Rops11g00146 1174 FunFam ATP-dependent DNA helicase RecQ 396 613 - -
Rops11g00146 1174 ProSiteProfiles HRDC domain profile. 991 1073 IPR002121 GO:0003676
Rops11g00146 1174 Pfam DEAD/DEAH box helicase 425 593 IPR011545 GO:0003676|GO:0005524
Rops11g00146 1174 MobiDBLite consensus disorder prediction 1073 1124 - -
Rops11g00146 1174 NCBIfam RecQ family ATP-dependent DNA helicase 415 890 IPR004589 GO:0004386|GO:0006310
Rops11g00146 1174 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 545 554 IPR002464 -
Rops11g00146 1174 Gene3D HRDC domain 988 1075 IPR044876 -
Rops11g00146 1174 SUPERFAMILY HRDC-like 994 1067 IPR010997 GO:0000166|GO:0044237
Rops11g00146 1174 CDD DEXHc_RecQ 414 613 - -
Rops11g00146 1174 Pfam RecQ zinc-binding 748 830 IPR032284 -
Rops11g00146 1174 PANTHER DNA HELICASE RECQ FAMILY MEMBER 392 1082 - -
Rops11g00146 1174 Pfam RQC domain 836 952 IPR018982 GO:0006260|GO:0006281|GO:0043138
Rops11g00146 1174 SMART ultradead3 419 622 IPR014001 -
Rops11g00146 1174 Gene3D - 837 947 IPR036388 -
Rops11g00146 1174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 755 IPR027417 -
Rops11g00146 1174 Gene3D - 387 613 IPR027417 -
Rops11g00146 1174 MobiDBLite consensus disorder prediction 1084 1112 - -
Rops11g00146 1174 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 631 776 IPR001650 -
Rops11g00146 1174 SMART RQC_2 839 950 IPR018982 GO:0006260|GO:0006281|GO:0043138
Rops11g00146 1174 Coils Coil 281 301 - -
Rops11g00146 1174 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 431 606 IPR014001 -
Rops11g00146 1174 CDD SF2_C_RecQ 614 746 - -
Rops11g00146 1174 Pfam Helicase conserved C-terminal domain 630 736 IPR001650 -
Rops11g00146 1174 SMART helicmild6 656 737 IPR001650 -
Rops11g00146 1174 FunFam Bloom syndrome, RecQ helicase 614 834 - -
Rops11g00146 1174 Pfam HRDC domain 995 1063 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00146 Rops-Chr11 1944509 1952968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00146 646 750 Eukaryotic Initiation Factors Gene Family AT1G72730 24.762 2.49e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00146 K10901 - gmx:100800006 1838.93