Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00134 ATGGCTGTACATACAGAATATTGTCTTATTGCTTACTCACAAGAGATTGTAGATGGGCAGCCTATTTTTGTTTCTTCAAATGGTCTTCCTATCAAGGCTTTGAAATTTGAACCTGCAGGTCACGCCTTCCATTCTGCTGCTCTTAAACTTCTTGGTGTCCAGGAAGATAATAGGGATGCTGACAATAAAAAAGTGGTTGATGATAAGGAACAGACTTATTTCCCATCATCCGATTCCTATAGCAGCAAGAGCAAAAAGAAATCTGCTTCTGGAGACAAGCAGCAAGATCACTATGCCTTATCGGCTGCGAAGCAGGCAAAAAAGGATGAAATAGAAAGTCACTTTAAGACAATTCAGGGAGTATATGAAGTGTTGATCGATCCTGTGAAGAGAAGAATTTATGATTCTATAGATGAGTTTGATGACGAGATTCCCACCGACTGTGCACCACAAGATTTCTTCAAGGTGTTTGGCCCTGCTTTTATGAGGAATGGCCGGTGGTCAGTTAATCAACCAATTCCACCACTAGGGGATGATAATACTCCATTAAAAGAAGTTGATAATTTCTACAATTTTTGGTATTCATTCAAAAGCTGGAGAGAGTTTCCCCATGCCGATGAGTTTGATCTTGAGCAAGCTGAATCTCGAGACCATAGGAGGTGGATGGAAAGGCAGAATGCAAAACTGACAGAGAAAGCCAGGAAAGAAGAGTATGCACGGATACGCATTCTTGTTGATAATGCTTATAAGAGAGACCCAAGAATATTGAGAAGGAAGGAAGAGGAAAGAGCTGAGAAGCAAAGGAAAAAGGAGGCTAGGATCCTGGCAAAAAAGATGCAGGAAGAAGAAGCAGCCAGAATTGCAGAAGAGGAGAGGCGGAGAAAAGAGGAGGAAGAGAGACAAGCTGCAGAAGTTGCTTTACGACAGAAGAGGGCTAAGGAGAAAGAGAAAAAGCTGTTGCGGAAGGAGCGAACTCGTCTTAGAACTCTTTCAGGACCTATCTTGTCACAACATTTACTTGACATTTCTGATGATGATGTAGAAAGCCTTTGCATGTCACTTGACATGGAGCAGCTGAGGGGTTTGTGTGAGAAAATGGAAGGCAGACAGGTGTCAGAGCAAGCAAAAGTTCTAAGGGATGCATTGGATTGTAAGAAAGACGTGGTTGATGAGAAAAGAGAGAAACCTAATCAACCAAATGGTTCCATCAAGGCCAATGGCAATGGTTCACTAAGCAACACTGAGAAGAAGGAGAAACCTTGGAATAAAGAAGAGATTGAACTATTGAGGAAAGGAATGCAAAAATATCCTAAAGGGACTTCACGGAGATGGGAGGTTATTTCTGAATACATTGGTACTGGAAGATCCGTTGAAGAAATTATGAAGGCAACTAAAACTGTTCTCCTCCAGAAGCCTGATTCATCCAAAGCTTTTGACACGTTTCTTGAGAAAAGGAAACCTGCTGAACGAACAATTGCATCTCCACTGACAACCAGAGAAGAATTGGAAGGGGCATCAACAACTCCTGGGACCGGGAGGCCTGAAAATAGTGCTGCCTCCTCCTCAACAACAAATAACTTGGAAGATTCTCAGAGCAAAAATACAGATATTCAGAACTCTACTGCTGCAAATGGAGTTTCCTCTAGTTCAGAACAAGATGTATGGTCTGCAGTGCAGGAAAGAGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACTAGCCAGAGATGGGAACGAGTCGCAACAGCTGTACCTGGGAAGACAGTGAATCAGTGCAAGAAAAAATTTGCAATGATGAAGGAGAGTTTCAGGAACAAGAAAAGTGCAGTTTAA 1836 0.4216 MAVHTEYCLIAYSQEIVDGQPIFVSSNGLPIKALKFEPAGHAFHSAALKLLGVQEDNRDADNKKVVDDKEQTYFPSSDSYSSKSKKKSASGDKQQDHYALSAAKQAKKDEIESHFKTIQGVYEVLIDPVKRRIYDSIDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPPLGDDNTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHRRWMERQNAKLTEKARKEEYARIRILVDNAYKRDPRILRRKEEERAEKQRKKEARILAKKMQEEEAARIAEEERRRKEEEERQAAEVALRQKRAKEKEKKLLRKERTRLRTLSGPILSQHLLDISDDDVESLCMSLDMEQLRGLCEKMEGRQVSEQAKVLRDALDCKKDVVDEKREKPNQPNGSIKANGNGSLSNTEKKEKPWNKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPAERTIASPLTTREELEGASTTPGTGRPENSAASSSTTNNLEDSQSKNTDIQNSTAANGVSSSSEQDVWSAVQERALVQALKAFPKETSQRWERVATAVPGKTVNQCKKKFAMMKESFRNKKSAV* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00134 611 Gene3D - 412 471 - -
Rops11g00134 611 ProSiteProfiles Myb-like domain profile. 413 468 IPR001005 -
Rops11g00134 611 MobiDBLite consensus disorder prediction 480 548 - -
Rops11g00134 611 MobiDBLite consensus disorder prediction 399 415 - -
Rops11g00134 611 Gene3D - 545 611 - -
Rops11g00134 611 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 102 610 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Rops11g00134 611 ProSiteProfiles SANT domain profile. 550 605 IPR017884 -
Rops11g00134 611 MobiDBLite consensus disorder prediction 500 548 - -
Rops11g00134 611 SMART sant 551 603 IPR001005 -
Rops11g00134 611 SMART sant 417 470 IPR001005 -
Rops11g00134 611 SUPERFAMILY Homeodomain-like 553 608 IPR009057 -
Rops11g00134 611 CDD SANT 420 462 IPR001005 -
Rops11g00134 611 ProSitePatterns Nt-dnaJ domain signature. 115 134 IPR018253 -
Rops11g00134 611 SUPERFAMILY Chaperone J-domain 109 162 IPR036869 -
Rops11g00134 611 SUPERFAMILY Homeodomain-like 415 462 IPR009057 -
Rops11g00134 611 Coils Coil 262 330 - -
Rops11g00134 611 MobiDBLite consensus disorder prediction 389 420 - -
Rops11g00134 611 CDD SANT 555 601 IPR001005 -
Rops11g00134 611 ProSiteProfiles Myb-like domain profile. 547 601 IPR001005 -
Rops11g00134 611 FunFam Myb family transcription factor 549 609 - -
Rops11g00134 611 Pfam Myb-like DNA-binding domain 554 599 IPR001005 -
Rops11g00134 611 MobiDBLite consensus disorder prediction 73 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00134 Rops-Chr11 1854400 1858260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00134 110 256 C2H2 Transcription Factor Family AT1G74250 26.344 1.29e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g00134 Myb_DNA-binding 7.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00134 K09522 - gmx:100806665 894.804