LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g00131	ATGGCGGTGTCACTGTGGAGAGGTCGTTTAGCTTCGTCGGCGTTCAACTTGTTCAACCATGCTCTTCGCCGTTTCTCTTCCGCCGCAGAGGTTAGAAACGGCATTCCTGATGGTGTGCGTGAGAGTATGATGTTTTCTGACATAAACTCACAGATCGGTAGTTGCATGCCTCTGTCTTCGATGCGAATCGGAACTATCATTCACAACATTGAGATGAAGCCAGGTCAAGGTGGGAAGCTGGTCCGAGCAGCTGGAACAAAGGCTAAGATCTTGAAAGACCCAACTTCAGCTTACTGTTTGATCCAATTACCCTCTGGTGTTAAAAAATTGATAGATTCTCGATGCAGGGCCACCGTTGGTGTGGTCTCTAATCCAACACATGGCGATCGTAAGCTTAGTAAGGCCGGACATAGCCGATGGCTTGGTCGAAGACCGGTGGTTAGAGGAGTGGCGATGAATCCGGTGGATCATCCTCATGGTGGTGGAGAGGGTAAGAGCAAGAGTAGTGGACGGTGGGGGAAAGGTTCTCGCACTCCTTGGGGTAAGCCTACTAAGGGTGGTTACAAGACTGGACCCCTCAAGCGCAGAAGGTAG	594	0.5067	MAVSLWRGRLASSAFNLFNHALRRFSSAAEVRNGIPDGVRESMMFSDINSQIGSCMPLSSMRIGTIIHNIEMKPGQGGKLVRAAGTKAKILKDPTSAYCLIQLPSGVKKLIDSRCRATVGVVSNPTHGDRKLSKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWGKGSRTPWGKPTKGGYKTGPLKRRR*	198

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g00131	197	PANTHER	RIBOSOMAL PROTEIN L2	46	196	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
	Rops11g00131	197	FunFam	60S ribosomal protein L2, mitochondrial	46	122	-	-
	Rops11g00131	197	ProSitePatterns	Ribosomal protein L2 signature.	145	156	IPR022671	GO:0003735\|GO:0005840\|GO:0006412
	Rops11g00131	197	Gene3D	Ribosomal protein L2, domain 3	123	197	IPR014726	-
	Rops11g00131	197	Gene3D	-	46	122	IPR014722	-
	Rops11g00131	197	SMART	Ribosomal_L2_C_2	50	183	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Rops11g00131	197	MobiDBLite	consensus disorder prediction	151	197	-	-
	Rops11g00131	197	FunFam	50S ribosomal protein L2	123	197	-	-
	Rops11g00131	197	SUPERFAMILY	Translation proteins SH3-like domain	52	187	IPR008991	-
	Rops11g00131	197	Pfam	Ribosomal Proteins L2, C-terminal domain	51	181	IPR022669	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g00131	Rops-Chr11	1833371	1834273	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g00131	49	162	Cytoplasmic Ribosomal Protein Gene Family	AT3G51190	43.333	1.88e-23	92.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g00131	-		-	gmx:100792418	307.375

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