Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00129 ATGGAGACTCACTTCAATCACAGTCTCTTCGATAGGCGCCCCTTCCTCAAGTCCAAGGCTCCCGCCGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATGTTGTAGCGACTGGTGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGATGCCGTCAAGGCCATGAAAGAAAAGGAAAAAGAACCTTCAGCGCCTGAGCCCGAACCCGAACCAGCTACTGAAGTACTTTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACATTCATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGCCATTATGAGGGATGTGGAAAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCCTCATTCATACAGGGGAGAGGGATTTTGTCTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCTTTGGATTTCAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAACTATCATATATGCCCATACCCGGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAACCATATTGCTTCTCATCATGAAAAGAATGCATCAGTGGATGTGACAAAGTATACTCCACCTTCAGAGAAGCAAACAAAAACTACCAAATCTTCTGGGGGAACTTACGGTTCAGCATCATCTGATAGGCCATATGCATGTCCTTATGAAGGGTGTGAAAAAGCATACATTCATGAATACAAGCTTAAACTACATTTGAAGAGGGAACATCCTGGCCACATGTCTGATGAAAATGCTGTGCATGCTCTAGCTAATGCTGACAATGAAATGGATGAAGCAAGTGATCAAGATGCCTACGCCGGGAAGCGGTCAAATGGGAAAAGTCAGAAGCAAAGTAAGGCCAAGCCAAACTTGAAGTTGCCTCCTTCCAAGATTGCCCGAAAAGGGTCAGCTCCAACTCCTTCCACTGTAAATGTGATTAAAAAACCTTGGCCAGTGAAAGAAGAAACTTATGATGAAGACAGTGAAGAAACTGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGATGATGACGAGGAGACAGAATATGAAGACTGA 1113 0.4385 METHFNHSLFDRRPFLKSKAPAVKWVKEWVPQDVVATGGKCMLLRWVTEDAVKAMKEKEKEPSAPEPEPEPATEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDVTKYTPPSEKQTKTTKSSGGTYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAVHALANADNEMDEASDQDAYAGKRSNGKSQKQSKAKPNLKLPPSKIARKGSAPTPSTVNVIKKPWPVKEETYDEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00129 370 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Rops11g00129 370 FunFam Putative zinc finger protein 143 103 133 - -
Rops11g00129 370 MobiDBLite consensus disorder prediction 273 370 - -
Rops11g00129 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Rops11g00129 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Rops11g00129 370 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Rops11g00129 370 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Rops11g00129 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Rops11g00129 370 FunFam zinc finger transcription factor YY1 77 102 - -
Rops11g00129 370 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Rops11g00129 370 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 345 - -
Rops11g00129 370 MobiDBLite consensus disorder prediction 285 300 - -
Rops11g00129 370 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Rops11g00129 370 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Rops11g00129 370 FunFam Zinc finger transcription factor YY1 204 271 - -
Rops11g00129 370 MobiDBLite consensus disorder prediction 192 226 - -
Rops11g00129 370 FunFam zinc finger transcription factor YY1 163 194 - -
Rops11g00129 370 MobiDBLite consensus disorder prediction 199 223 - -
Rops11g00129 370 Gene3D Classic Zinc Finger 77 102 - -
Rops11g00129 370 Gene3D Classic Zinc Finger 134 161 - -
Rops11g00129 370 Gene3D Classic Zinc Finger 163 195 - -
Rops11g00129 370 Gene3D Classic Zinc Finger 103 133 - -
Rops11g00129 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Rops11g00129 370 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Rops11g00129 370 FunFam Zinc finger protein 410 134 161 - -
Rops11g00129 370 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Rops11g00129 370 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Rops11g00129 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Rops11g00129 370 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Rops11g00129 370 SMART c2h2final6 136 160 IPR013087 -
Rops11g00129 370 SMART c2h2final6 166 190 IPR013087 -
Rops11g00129 370 SMART c2h2final6 77 101 IPR013087 -
Rops11g00129 370 SMART c2h2final6 229 254 IPR013087 -
Rops11g00129 370 SMART c2h2final6 106 130 IPR013087 -
Rops11g00129 370 Gene3D Classic Zinc Finger 201 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00129 Rops-Chr11 1820035 1824612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00129 10 356 C2H2 Transcription Factor Family AT4G06634 65.753 9.36e-153 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops11g00129 zf-C2H2 0.0088 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00129 - - zju:107412546 634.795