Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00109 ATGGTCCCCTTAACCTTCATTGTTTTCGCTCTGTTTTCTCTTCTGAATTCCTCTGTTTCTGCTTCATCCTTGCTCAGTGATTTCCATGCCTTAGTCTCACTTAGAGAAGCATTCCAATTCCCACACACAGTTCTAAACACTTGGAAAACTTCAAATTTCAGCTCAGTTTGTTCATGGGCTGGAATTCAGTGCCACCGGGGAAGAGTTGTGTCGGTGGACTTAACGGATTTGAATCTGTATGGCTCTGTTTCACCTTCAATTTCAACACTAAACAGGCTCACACACCTTTCCCTTGCAGGCAACAACTTCACTGGCACCATTCACATCACCAACTTAACCAACCTTCAATTTCTCAACATCTCCAATAACCAGCTTAGTGGTAACTTGGATTGGAACTACTCAACCATGGATAACTTACAAGTTCTTGACGTCTATAACAATAACTTCACTTCCTTGCTTCCTCTGGGGCTTCTGAGTTTGAAGAGGCTCAGGTACTTGGATCTTGGTGGAAACTTTTTCAACGGTGAAATCCCAGATAGCTATGGAAATTTAGTTGGGCTGGAATATCTCTCGCTAGCAGGAAATGATCTTCGTGGAAAAATCCCAGGTGAGTTGGGCAATCTCACTAACTTGAAGGAGATTTACTTGGGCTATTACAACTCTTTTGAAGGTGGGATTCCAGTGGAGTTTGGAAAGTTGGTAAATTTAGTTCACATGGATCTCTCAAGCTGTGATTTGGATGGTCCAATTCCAAGAGAATTGGGGAACTTGAAGGAGCTTGACACCCTTTACTTGCATATCAATCAGCTTTCTGGTTCTATACCAAAACAGCTAGGCAACTTGACTAACTTGGTGAACCTTGATCTTTCCAGCAATGCGCTCACTGGAGAAATCCCATTTGAGTTCATCAACCTCAAGCAACTCAAGATCTTCAATCTTTTCTTGAACAGGTTACATGGTTCCATACCGGACTACATTGCAGACTTGCCTGATTTAGAGACACTTGGGCTGTGGATGAACAACTTCACAGGAGAAATTCCAAAGAACCTTGGCCTAAGTGGGAAGCTGCAATTACTTGATTTGTCCTCCAATAAGCTCACTGGTGTGATTCCACCTCATCTATGTTCCTCAAATCAGCTCAGGATTTTGATTCTCCTCAATAATTTCCTCTTTGGGCCCATACCTGAAGGTATGGGAACATGTTACAGTCTAACTAGAGTAAGGTTAGGACAGAATTACCTGAATGGTAGCATTCCAAATGGTTTTCTTTACCTTCCTAAGCTAAATTTAGCTGAGTTACAGAACAACTATTTGTCAGGAACTTTGTCAGAAAATGCTAATAGTTCCTCTCAGCCTGTTAATTTAGCCCAACTTGATTTGTCAAACAATGCCTTGTCTGGTCCTTTACCACATTCACTGTCAAATTTCTCTTCCATTCAAATCCTTTTGCTCAGTGGAAACCAATTCTCAGGTCCAATCCCACCTTCCATTGGAGGACTCAATCAAGTGCTAAAGCTTGATCTTAGCAGGAATTCATTATCCGGTGAAATTCCACCTGAAATTGGGTCCTGTGTCCATCTCAACTACCTTGACATGAGCCAGAACAATCTCTCAGGTTCCATCCCACCTGAGATTTCCAATATCCGTATCTTGAATTACTTAAACTTGTCAAGAAACCATTTGAACCAAACCATCCCGAGATCAATCGGGACCATGAAAAGCCTCACTATTGCTGATTTCTCCTTCAATGAATTCTCTGGTAAGTTGCCAGAGTCAGGGCAATTTGCATTCTTTAATGCCTCATCTTTCGCGGGTAATCCTCAACTTTGCGGTTCTCTCTTGAATAACCCTTGTAATTTCACCAGAATCACATCCCCACCTGGAAAAAGCTCTGCAGATTTTAAGCTAATATTTGCCCTTGGCCTATTGATATGCTCTCTAGTATTTGCCACTGCAGCCATTATAAAGGCCAAGTCATTCAAAAAGAATGGCCCCAGTTCTTGGAAGATGACTGCATTCCAAAAGCTGGAATTCACAGTTTCAGACATCCTTGAATGTGTGAAAGATGGCAACGTGATTGGAAGAGGAGGAGCTGGGATTGTTTACCATGGAAAAATGCCAAATGGGGTCGAAGTTGCAGTGAAAAAACTACTCGGGTTTGGTGCAAACAGCCATGATCATGGCTTCCGAGCTGAAATTCAAACACTAGGAAACATAAGGCACAGAAACATTGTGAGGTTACTTGCATTCTGCTCCAACAAAGAGACGAATCTGCTAGTGTACGAGTACATGAGGAATGGGAGCTTAGGTGAGACATTGCATGGGAAAAAAGGTGCATTCTTGAGTTGGAACTTGAGGTACAAAATTTCCATTGACTCAGCTAAAGGCCTCTGCTACCTTCACCATGATTGTTCACCGTTGATCGTCCACCGAGACGTGAAATCCAACAACATTTTGTTGAATTCCAATTTCGAAGCACACGTGGCTGATTTCGGCCTAGCAAAGTTCTTGATGGATGGCGGCGCTTCCGAGTACATGTCTTCAATTGCAGGCTCCTATGGTTACATTGCACCTGAGTATGCTTATACATTGAGGGTGGATGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTTTTATTAGAGCTTCTAACAGGGAGGAAGCCTGTGGGGGATTTTGGAGAAGGTGTGGATCTTGTACAATGGTGTAAGAAAGCAACTAATGGCCGCAAAGAAGAGGTTATGAACATAGCTGATTTAAGGCTCACGGTGGTGCCTAAAGAGGAAGCCATGCACATGTTCTTCATTGCCATGTTATGCTTAGAAGAGAACAGTGTGCAGAGACCCACCATGAGGGAAGTGGTTCAGATGCTCTCTGAATTTCCTCGGCGATCATCTGAGTACCAATCTTCTTCCTCTCATTCCACTAATCATCCACCAAGCAAAAAACTTGAGAAAGAGAAACCTTGTCCTCCTACTTTTAAACAAGACCTTTTGGTTTAG 3000 0.4253 MVPLTFIVFALFSLLNSSVSASSLLSDFHALVSLREAFQFPHTVLNTWKTSNFSSVCSWAGIQCHRGRVVSVDLTDLNLYGSVSPSISTLNRLTHLSLAGNNFTGTIHITNLTNLQFLNISNNQLSGNLDWNYSTMDNLQVLDVYNNNFTSLLPLGLLSLKRLRYLDLGGNFFNGEIPDSYGNLVGLEYLSLAGNDLRGKIPGELGNLTNLKEIYLGYYNSFEGGIPVEFGKLVNLVHMDLSSCDLDGPIPRELGNLKELDTLYLHINQLSGSIPKQLGNLTNLVNLDLSSNALTGEIPFEFINLKQLKIFNLFLNRLHGSIPDYIADLPDLETLGLWMNNFTGEIPKNLGLSGKLQLLDLSSNKLTGVIPPHLCSSNQLRILILLNNFLFGPIPEGMGTCYSLTRVRLGQNYLNGSIPNGFLYLPKLNLAELQNNYLSGTLSENANSSSQPVNLAQLDLSNNALSGPLPHSLSNFSSIQILLLSGNQFSGPIPPSIGGLNQVLKLDLSRNSLSGEIPPEIGSCVHLNYLDMSQNNLSGSIPPEISNIRILNYLNLSRNHLNQTIPRSIGTMKSLTIADFSFNEFSGKLPESGQFAFFNASSFAGNPQLCGSLLNNPCNFTRITSPPGKSSADFKLIFALGLLICSLVFATAAIIKAKSFKKNGPSSWKMTAFQKLEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGVEVAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGETLHGKKGAFLSWNLRYKISIDSAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFLMDGGASEYMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRKPVGDFGEGVDLVQWCKKATNGRKEEVMNIADLRLTVVPKEEAMHMFFIAMLCLEENSVQRPTMREVVQMLSEFPRRSSEYQSSSSHSTNHPPSKKLEKEKPCPPTFKQDLLV* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00109 999 Gene3D Ribonuclease Inhibitor 134 218 IPR032675 -
Rops11g00109 999 ProSiteProfiles Protein kinase domain profile. 687 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00109 999 Gene3D Ribonuclease Inhibitor 321 623 IPR032675 -
Rops11g00109 999 SMART LRR_typ_2 257 281 IPR003591 -
Rops11g00109 999 SMART LRR_typ_2 548 572 IPR003591 -
Rops11g00109 999 SMART LRR_typ_2 500 524 IPR003591 -
Rops11g00109 999 SMART LRR_typ_2 136 159 IPR003591 -
Rops11g00109 999 SMART LRR_typ_2 184 208 IPR003591 -
Rops11g00109 999 SMART LRR_typ_2 329 353 IPR003591 -
Rops11g00109 999 SMART LRR_typ_2 354 377 IPR003591 -
Rops11g00109 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 134 220 - -
Rops11g00109 999 SUPERFAMILY Protein kinase-like (PK-like) 674 957 IPR011009 -
Rops11g00109 999 SUPERFAMILY L domain-like 354 611 - -
Rops11g00109 999 Pfam Protein tyrosine and serine/threonine kinase 690 957 IPR001245 GO:0004672|GO:0006468
Rops11g00109 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 656 763 - -
Rops11g00109 999 MobiDBLite consensus disorder prediction 963 999 - -
Rops11g00109 999 Gene3D Phosphorylase Kinase; domain 1 651 763 - -
Rops11g00109 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 764 974 - -
Rops11g00109 999 Pfam Leucine Rich Repeat 162 182 IPR001611 GO:0005515
Rops11g00109 999 Pfam Leucine Rich Repeat 355 375 IPR001611 GO:0005515
Rops11g00109 999 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Rops11g00109 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 622 - -
Rops11g00109 999 ProSiteProfiles Leucine-rich repeat profile. 138 159 IPR001611 GO:0005515
Rops11g00109 999 Gene3D Ribonuclease Inhibitor 219 320 IPR032675 -
Rops11g00109 999 Gene3D Ribonuclease Inhibitor 26 133 IPR032675 -
Rops11g00109 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 340 959 - -
Rops11g00109 999 SMART serkin_6 687 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00109 999 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 26 133 - -
Rops11g00109 999 Gene3D Transferase(Phosphotransferase) domain 1 764 982 - -
Rops11g00109 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Rops11g00109 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 221 326 - -
Rops11g00109 999 SUPERFAMILY RNI-like 71 391 - -
Rops11g00109 999 MobiDBLite consensus disorder prediction 963 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00109 Rops-Chr11 1592243 1597042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00109 15 962 Receptor kinase-like Gene Family AT5G65700 57.884 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops11g00109 PK_Tyr_Ser-Thr 6.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00109 - - qsu:112009585 1571.6