Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00108 ATGAGAAGACCAAAATCAAAGGAATTTCGTAAGCAACAGCGTATCTCAGAAGAAGAGGAGATAAAGCTAATGGATTCATGGATCCAATGCCAGAAACCAGACTCAGGTTCCAACCCCATGTCTCTGCCTCCTCTCCCCAAAAACACTCCCATTGGTTGCCTCGACGACAACACCTTCTCCCGCTACGCCGGTGTCGTGAGCTTCGAACACTTGCCACTTTCGAAGAAAACCAAAGACGCTTTGCGAGAATCCAAGTTCGTTAGAATGACTGACATACAGAGAGCTTCTCTTCCCCACGCTCTTTGTGGCCGTGACATTCTCGGCGCCGCCAAAACTGGTTCCGGAAAAACCCTCGCTTTCATTATCCCCGTGTTGGAGAAGTTATATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATTATCATATCACCTACTAGAGAGTTAGCTGGTCAGATATTTGATGTGTTGAAGTGTGTTGGCAAGTACCATGGTTTCAGTGCTGGCCTACTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAACAACGTGTCAACGAGCTTAACATTTTGATCTGCACACCTGGTCGCCTTCTGCAACACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGGTTTTAGTACTAGATGAGGCTGATCGTATTCTCGACAGTGGATTCAAGAAGGAACTGAATGCAATCATCTCACAACTACCGAAGCGAAGACAAACCTTGCTTTTCTCAGCAACTCAAACAAAGTCGATTCAAGATCTTGCAAGACTAAGTTTGAAAGACCCAGAGTATCTGAGCGTGCATGAAGAATCTGTGACTGCCACTCCTACTCTCTTAAAGCAAATTGTGATGGTTGTTCCCCTGGATCAAAAGTTAGATATGCTGTGGAGTTTTATAAAGACACATCTACAATCAAAAACACTTGTCTTTCTTTCAAGTTGTAAACAGGTAAAATTTGTCTTTGAAGCATTCAAGAAACTGCACCCTGGCATACCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGATTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCTGCAAGAGGTCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCATCTTACATACATAGAGTTGGCCGTACAGCTCGTTATAAATCTGGTGGAAAGTCAGTTTTATTTCTACTGCCCTCAGAAATTCAAATGCTTGAAAAGTTACAGGCAGCAAAGGTTCCAGTGCAATTTAATAAGCCAAGGAAAGAACTACTGCAGCCAATTTCTGGTTTGTTGGCATCTTTACTGGTCAAGTACCCTGACCTGCAGCAGCGGGCCCAAAGGGCGTTTGTCACATATTTGAGATCCATCCATATCCAAAAGGATAAAGAGATCTTTGATGTAACAAAACTACCTATTGATGAGTATTCAGCATCATTAGGTTTGCCAATGACCCCCAAAATCCGTTTTCTAAACCAGAAAATTAAATCTAAAGCTGTGTCAACAAAATCAATTTTAGTTGAACCAGAGGATTCAAACAAGGAAAATGTCTTGGAGGTTTCAAAAAAGAAGCCAGACACAGTTGTTTTCAAAGATGAGGAAACCGAAAATGATCTTCTTCATACAGCTGATACCTCTAATGAAGGCGAAGTGAAGTCATCTGAAATTGGAGAAATAATACCTGCAACTCGTGTGTTGAAGAAAAAGAAGCTCAAGATTAATGTACATAGACCACTGGGGACTCGGGTTGTATTTGATGATGAAGGCAATACACTTCCTCCACTAGCCAGGATTGCCGACAGACAAAGTGGCAAAGAAACATTGCTTATTGACCCAGAACAAAAAGCTGAATACTACAAAAGGATGCGAGAGGATTTGAAAAAGGCGGACAAGGAAGACAAACTTGTAGAGCGTCAGCGGCGGAGAGAAAAAAGAATCAAGCAGAAGATGAAGTGGAAGACAGGAGACAAGGAAGAGGAGGATGACCAAGTTAATACTTCTGGGTCAGAAGGAGACGAAAATGTAGTTAGACGGCATAAAAAGAGTAAAGTATACTTTGATAGTGACAGTGATGAGGGTGAAAGAAATGATGTCACAGGGAATGCAGGCTCCGTTACTTTGGAGGAGCAAGAAGCTCTGGCTTTGAAATTGTTAAATTCCATGCACTCATAG 2232 0.4243 MRRPKSKEFRKQQRISEEEEIKLMDSWIQCQKPDSGSNPMSLPPLPKNTPIGCLDDNTFSRYAGVVSFEHLPLSKKTKDALRESKFVRMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKCVGKYHGFSAGLLIGGRKDVDMEKQRVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMVVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSDFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLEKLQAAKVPVQFNKPRKELLQPISGLLASLLVKYPDLQQRAQRAFVTYLRSIHIQKDKEIFDVTKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVSTKSILVEPEDSNKENVLEVSKKKPDTVVFKDEETENDLLHTADTSNEGEVKSSEIGEIIPATRVLKKKKLKINVHRPLGTRVVFDDEGNTLPPLARIADRQSGKETLLIDPEQKAEYYKRMREDLKKADKEDKLVERQRRREKRIKQKMKWKTGDKEEEDDQVNTSGSEGDENVVRRHKKSKVYFDSDSDEGERNDVTGNAGSVTLEEQEALALKLLNSMHS* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00108 743 SMART helicmild6 325 408 IPR001650 -
Rops11g00108 743 Gene3D - 55 278 IPR027417 -
Rops11g00108 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 274 IPR027417 -
Rops11g00108 743 SMART DUF4217_3 447 510 IPR025313 -
Rops11g00108 743 Gene3D - 283 528 IPR027417 -
Rops11g00108 743 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Rops11g00108 743 MobiDBLite consensus disorder prediction 657 726 - -
Rops11g00108 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Rops11g00108 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Rops11g00108 743 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Rops11g00108 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 424 IPR027417 -
Rops11g00108 743 MobiDBLite consensus disorder prediction 669 684 - -
Rops11g00108 743 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Rops11g00108 743 CDD DEADc_DDX10 77 275 - -
Rops11g00108 743 MobiDBLite consensus disorder prediction 692 716 - -
Rops11g00108 743 Coils Coil 639 659 - -
Rops11g00108 743 PANTHER RNA HELICASE 65 587 - -
Rops11g00108 743 CDD SF2_C_DEAD 286 417 - -
Rops11g00108 743 Pfam Domain of unknown function (DUF4217) 452 508 IPR025313 -
Rops11g00108 743 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Rops11g00108 743 SMART ultradead3 85 289 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00108 Rops-Chr11 1553715 1558537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00108 65 429 Eukaryotic Initiation Factors Gene Family AT3G19760 27.568 3.71e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00108 K14776 - gmx:100792106 1291.56