Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00103 ATGGCATCTGCTAGCCTTGGAAATGGTGGGGTGGGGAGTTCCAGGTCTGGTAATGGTGCTGCCTTCAGGGGTTCATCCAGTTCTGTGGATTGGCTTGGCAGAGAGATGCTTGAGATGAGGTTGAGGGACAAGGTCGACCTCGATGAAGACAGGGATAGTGAGCCTGACGTCATTGATGGTGTGGGTGCTGAAACAGGACATGTGATAAGAACCAGCATCGGTGGCCGAAATGGTCAATCTAAGCAGAATGTTAGTTATATTGCGGAGCATGTAGTTGGAACAGGCTCTTTTGGTGTTGTTTTTCAAGCAAAATGTAGAGAAACTGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAACAGGGAGTTGCAAATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTGAGGCATTGTTTCTTTTCAACGACCGACAAAGAAGAACTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACTGTGAATCGTATTGCGAGAAACTATAGCAGGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGATATGCAGGGCCCTTGCTTATATACATAATTGCATTGGCATCTGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCACATACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCTTACATCTGCTCAAGATACTATCGTGCCCCGGAACTTATATTTGGTGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCGGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAACTAGTTGAAATCATCAAGGTTTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCTCCAGAAGCAGTGGACCTTGTTTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCATCCCTTCTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGGTCGCCCACTTCCTCCGCTGATTAATTTTAAACCTCAGGAACTTTCTGGGATACCCCCTGACGTCATCAATCGGCTTGTTCCAGAGCATGCTCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1275 0.4384 MASASLGNGGVGSSRSGNGAAFRGSSSSVDWLGREMLEMRLRDKVDLDEDRDSEPDVIDGVGAETGHVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLINFKPQELSGIPPDVINRLVPEHARKQNLFMALHT* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00103 424 FunFam Shaggy-related protein kinase kappa 166 414 - -
Rops11g00103 424 Gene3D Phosphorylase Kinase; domain 1 71 165 - -
Rops11g00103 424 Gene3D Transferase(Phosphotransferase) domain 1 166 414 - -
Rops11g00103 424 Pfam Protein kinase domain 88 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00103 424 MobiDBLite consensus disorder prediction 1 26 - -
Rops11g00103 424 CDD STKc_GSK3 81 373 IPR039192 -
Rops11g00103 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Rops11g00103 424 SUPERFAMILY Protein kinase-like (PK-like) 85 397 IPR011009 -
Rops11g00103 424 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 54 416 - -
Rops11g00103 424 FunFam Glycogen synthase kinase-3 beta 70 165 - -
Rops11g00103 424 ProSitePatterns Protein kinases ATP-binding region signature. 92 116 IPR017441 GO:0005524
Rops11g00103 424 ProSiteProfiles Protein kinase domain profile. 86 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00103 424 SMART serkin_6 86 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00103 424 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00103 Rops-Chr11 1503430 1510804 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00103 92 378 Core Cell Cycle Gene Families AT1G76540 34.915 2.68e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Rops11g00103 Pkinase 1.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00103 K03083 - jre:108983720 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00103 11 1503430 1510804 Rops2g01199 2 17185703 17190057 PCT