Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00098 ATGAACATGTCTTCAGAGAGTCGCCTGTGCTGTGGGAAGAACGCTCCCTCCGTAATCATCTTAAATCAAGAGAGGAAAGCCATGGCTCTGATCCTGCATGCTACGAAAACAAATAAAAATGGTTATAAGACTCTCATTGCCGCAGAGTACTGTGGTGTCCAAGTTGAATTGGCCCCTAATTTTGAGATGGGAGTCTCTAATAAAACTCCTGAATTTCGCAAGATGAATCCTATTGGAAAGGTTCCTGTGTTAGAAACGCCTGATGGTCCGGTCTTTGAGAGCAATGCCATTGCTCGTTACGTTGCTCGATTGAAGGGTGACAACACTTTGTTTGGATCTTCTCCTATTGATCAGGCCCACATTGAACAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATCTTATGACCTTGTACCTGCCAAGACTTGGATTTGCCCCATACCTTCCTCCAGTTGAGGAGACTGCAACTTCTTCATTGAAGAGAGCACTTGGGGCTTTGAACACTCACCTTGCCTCCAATACTTACCTGGTTGGGCATTCCATTACCCTTGCTGACATCATAATGACTTGCAATTTGTATTTAGGTTTCACTGTGCTCTTAGTCAAGAGCTTCACCTCAGAGTTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAACCAGCCAAACTTCCGAAAGATATTAGGTCAGGTTAAGCAGACTGAGGCTCTTCCACCTGTTCAATCCGCAAAGAAGCCTTCCCAGCCTAAGGAATCTAAACCCAAGGCTAAAGAAGAACCAAAGAAAGTGGCTAAACCAGAGCTAGAAAAGCCCAAAGAAGAAGCAGAAGAGGAGGCACCCAAGCCCAAACCCAAGAATCCTCTTGATCTTCTTCCTCCAAGTAAGATGATATTGGATGAGTGGAAAAGACTCTACTCTAACACTAAGACCAACTTCCGTGAGGTTGCAATCAAAGGATTTTGGGACATGTATGATCCAGAGGGATACTCTCTTTGGTTCTGTGATTACAAATACAACAACGAGAACACTGTTTCCTTTGTGACATTGAACAAGGTTGGTGGATTTCTTCAGCGTATGGATCTGGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCACAGGCACCATATAAAGTGAAAGGGTTGTGGCTTTTCCGTGGGCAACAAATTCCACAATTTGTGCTTGATGAATGCTATGACATGGAGCTATATGAGTGGACAAAGGTTGACATCTCTGATGAAGCTCAGAAAGAGCGTGTCAACCAGATGATTGAAGATTACGAACCATTTGAGGGAGAGCCTCTTTTGGATGCCAAGTGCTTTAAGTGA 1341 0.4377 MNMSSESRLCCGKNAPSVIILNQERKAMALILHATKTNKNGYKTLIAAEYCGVQVELAPNFEMGVSNKTPEFRKMNPIGKVPVLETPDGPVFESNAIARYVARLKGDNTLFGSSPIDQAHIEQWIDFASLEIDANLMTLYLPRLGFAPYLPPVEETATSSLKRALGALNTHLASNTYLVGHSITLADIIMTCNLYLGFTVLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEALPPVQSAKKPSQPKESKPKAKEEPKKVAKPELEKPKEEAEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNNENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSQAPYKVKGLWLFRGQQIPQFVLDECYDMELYEWTKVDISDEAQKERVNQMIEDYEPFEGEPLLDAKCFK* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00098 446 Pfam Glutathione S-transferase, C-terminal domain 156 224 IPR004046 -
Rops11g00098 446 SFLD Glutathione Transferase (cytosolic) 32 217 IPR040079 -
Rops11g00098 446 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 28 109 IPR004045 -
Rops11g00098 446 FunFam Elongation factor 1 gamma 107 243 - -
Rops11g00098 446 SUPERFAMILY eEF1-gamma domain 286 446 IPR036433 GO:0003746|GO:0006414
Rops11g00098 446 MobiDBLite consensus disorder prediction 250 286 - -
Rops11g00098 446 Pfam Glutathione S-transferase, N-terminal domain 36 103 IPR004045 -
Rops11g00098 446 SUPERFAMILY Thioredoxin-like 23 111 IPR036249 -
Rops11g00098 446 SFLD Main (cytGST) 32 217 - -
Rops11g00098 446 SUPERFAMILY GST C-terminal domain-like 100 241 IPR036282 -
Rops11g00098 446 CDD GST_C_EF1Bgamma_like 117 237 - -
Rops11g00098 446 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 28 446 IPR044628 GO:0004364
Rops11g00098 446 SMART EF1G_2 285 393 IPR001662 GO:0003746|GO:0006414
Rops11g00098 446 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 286 446 IPR036433 GO:0003746|GO:0006414
Rops11g00098 446 MobiDBLite consensus disorder prediction 237 293 - -
Rops11g00098 446 CDD GST_N_EF1Bgamma 32 104 - -
Rops11g00098 446 Gene3D - 107 241 - -
Rops11g00098 446 FunFam Elongation factor 1B gamma 28 101 - -
Rops11g00098 446 Pfam Elongation factor 1 gamma, conserved domain 285 392 IPR001662 GO:0003746|GO:0006414
Rops11g00098 446 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 114 242 IPR010987 -
Rops11g00098 446 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 286 446 IPR001662 GO:0003746|GO:0006414
Rops11g00098 446 Gene3D Glutaredoxin 27 101 - -
Rops11g00098 446 FunFam Elongation factor 1-gamma 1 286 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00098 Rops-Chr11 1449556 1452292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00098 28 446 Eukaryotic Initiation Factors Gene Family AT1G57720 73.986 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00098 K03233 - gmx:100795680 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00098 11 1449556 1452292 Rops11g00098 11 1449556 1452292 ECH