Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00090 ATGGGAAGGAAAAAGACTGAAGATGCTGGCCCATCTGCAAAGGCTAAGGCAAGTACCAAAGATGCTTCTAAGAAGGAAAAATTTTCTGTCTCTGCCATGCTGGCTAGTATGGATGAAAAGCCTGATAAATCCAAAAAAGTATCTTCTTCCTCCATTAAGCCCAAGCCGAAATCTGCTCCAAAAGCTTCAACATACACTGATGGTATTGATCTTCCTCCCTCTGATGATGAAGAAGATGAGTATCTCTCGGGAGAGGAGCAACAGCAAAATAACATGTCCAAACGGTCCAGTCAGCAGCAGAGACCTGATTTGAAGCCACTTGAAGTGTCTGTTGCAGACAAAGAGTTGAAGAAGCGTGAAAAGAAAGATCTTTTAGCTGCCCATGCTGCTGAGCAGGCGAAGAAGGAAGCTCTTAAGGATGATCATGATGCTTTTACTGTTGTCATCGGAAGCCGGACTTCAGTGCTTGATGGAGAAGATGCTGCTGATGCTAATGTCAAAGATATAACTATAGAAAATTTCTCTGTGTCTGCTCGGGGTAAAGAACTTCTGAAAAATGCATCAGTGAGGATATCTCATGGGAAGCGGTATGGTTTGGTTGGGCCCAATGGAATGGGCAAGTCAACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCACTTGAAGCTGTTGTTTCAGCTAATGATGAACTTGTTAAAATTCGACAAGAAGTTGCTGCTCTACAGAATGCAGCTTCTGATGAGGGAAGTGCAGATAAAGATATTAATTATGAGGAAGATGATACAGGAGAGAAGCTAGCAGAGCTGTATGAAAAATTACAGCTGATGGGGTCGGATGCTGCTGAAGCTCAGGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACAAAATCATTCAGTGGTGGCTGGAGGATGAGAATATCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGCCGTTGGAAGAAAACTTTGGTGGTTGTCTCACATGATAGGGATTTCCTCAATACAGTATGCACTGAGATTATTCATCTGCATGATATGAAACTCCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGTGGGTATGAACAACGTCGTAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAATTGAAAGCAGCTAAAAGGAGTGGAAACCGGGCTCAGCAAGAAAAGGTGAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAAGCAAGGGTAAGAGCAAGATCGATGATGGCGAGGCCCCACCTGAGGTACCACACAAGTGGAGGGACTACAGCGTTGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGGGGGGATTTTAGACTATCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTGCTAAATCTTCTGGCCGGTGATTTGGTTCCAGCTGAAGGTGAAGTTCGAAGGAGTCAGAAGCTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACACCTGTTCAGTACCTTCTTCGTCTCCACCCAGACCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGCTACCTAGCCATAACCATCTTACCCCTATTGCCAAGCTATCAGGGGGGCAGAAAGCTCGGGTGGTCTTCACATCGATATCCATGTCAAAACCCCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCTGATGCACTGGATGAATTCACTGGTGGAGTCGTTCTTGTTAGTCATGATTCTAGATTAATATCACGTGTCTGTGAGGATGAAGAAAGGAGTCAAATATGGGTTGTTGAGGATGGTACTGTCAGAACTTTCCCTGGAACATTTGAGGATTACAAGGAGGATTTACTGAGAGAGATCAAAGCTGAAGTTGATGATTGA 2190 0.4384 MGRKKTEDAGPSAKAKASTKDASKKEKFSVSAMLASMDEKPDKSKKVSSSSIKPKPKSAPKASTYTDGIDLPPSDDEEDEYLSGEEQQQNNMSKRSSQQQRPDLKPLEVSVADKELKKREKKDLLAAHAAEQAKKEALKDDHDAFTVVIGSRTSVLDGEDAADANVKDITIENFSVSARGKELLKNASVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVAALQNAASDEGSADKDINYEEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDMKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKSKGKSKIDDGEAPPEVPHKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNRGDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPAEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVRTFPGTFEDYKEDLLREIKAEVDD* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00090 729 CDD ABCF_EF-3 502 704 - -
Rops11g00090 729 Coils Coil 121 141 - -
Rops11g00090 729 FunFam ABC transporter F family member 4 167 451 - -
Rops11g00090 729 Pfam ABC transporter 184 355 IPR003439 GO:0005524
Rops11g00090 729 MobiDBLite consensus disorder prediction 85 104 - -
Rops11g00090 729 Coils Coil 419 439 - -
Rops11g00090 729 Gene3D - 472 728 IPR027417 -
Rops11g00090 729 FunFam ABC transporter F family member 4 467 729 - -
Rops11g00090 729 Pfam ABC transporter 519 654 IPR003439 GO:0005524
Rops11g00090 729 MobiDBLite consensus disorder prediction 436 477 - -
Rops11g00090 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 715 IPR027417 -
Rops11g00090 729 MobiDBLite consensus disorder prediction 1 115 - -
Rops11g00090 729 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 169 430 IPR003439 GO:0005524
Rops11g00090 729 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 502 727 IPR003439 GO:0005524
Rops11g00090 729 CDD ABCF_EF-3 169 398 - -
Rops11g00090 729 Gene3D - 166 452 IPR027417 -
Rops11g00090 729 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 144 722 - -
Rops11g00090 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 426 IPR027417 -
Rops11g00090 729 SMART AAA_5 528 704 IPR003593 GO:0016887
Rops11g00090 729 SMART AAA_5 193 407 IPR003593 GO:0016887
Rops11g00090 729 ProSitePatterns ABC transporters family signature. 327 341 IPR017871 GO:0005524|GO:0016887
Rops11g00090 729 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00090 Rops-Chr11 1407878 1411535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00090 502 705 Calmodulin-binding Proteins AT2G36910 28.251 4.41e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00090 K06184 - gmx:100806865 1205.28