Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00089 ATGGCTGCAATCTACCAATCTGTGTCGCCCAAACTCAGTGAATGGGTGAAGGGTAAGATGGTTGGATCTGGATCTTTTGGAACTGTCCATTTGGCCATGAACAAATCCACTGGTGGGCTCTTCGTTGTGAAATCAGCACATTCTGGGTCTGGAAGTGAGGCTTTGGACAATGAGATCAAAATCCTAAAGACTTTAAAATCATCACCCTTCATTGTCCAATGGTTGGGGACAGAGGAGGACCAAGGTAACCTCAAAGTTTTTATGGAGTATATGGCAGGGGGTAGTTTGGCTGATGTGGCACACAAGTTTGGTGGGTCATTAGATGAAGAGGTGGTTCGGGTGTACACTAGAGAAATTCTTCTTGGGTTGAAGCATCTTCACCAACATGGAATTGTACATTGTGATCTTAAGTGCAAGAATTTGCTTATGGGCTCATCTGGGAACATCAAGCTGGCGGATTTTGGATGTGCAAAAAGGGTAAAGGACTTCAAGGGTCGTTGGCAGAGTGTTGGTGGCACTCCTCTATGGATGGCTCCTGAGGTATTGAGGAATGAGATGTTGGATTTTGCTGCAGATATATGGTCTTTGGGATGCACAGTTATTGAGATGGCCACTGGTAGGCCTCCTTGGGTTGATGAGGTTTCAAATCCAATGGCTTCTGTGCTCAGGATTGCCTATGGTGATGGGATACCTCAGTTTCCAACCCATTTATCAAAGGAGGGTTTGGATTTCTTGAGCAGGTGCTTGCAGAAAGAACCCAACAAGAGGTGTACCATTGACAAGTTACTTAGCCATCCATTTGTTTCAAGGAGACCGTCTCAGAAAGAAGATGTTGCTTCCTCACCAGCATGTGTCTTGCAGGTTCAAAATTTTGAGGATGCTTATGATGATTTAGATGAATCGGAAAGTCCAGCAGGGAATGATTTTTCAATCAGAAACTCATTTGTGTGCTGTGATGACCCAGATGGAAAGGCAATATGGCAAGTGGAAGACAGTGCATCGGGGTCATCAGGGAACTGGATTACCATTAGATCAGGGTGA 1041 0.4496 MAAIYQSVSPKLSEWVKGKMVGSGSFGTVHLAMNKSTGGLFVVKSAHSGSGSEALDNEIKILKTLKSSPFIVQWLGTEEDQGNLKVFMEYMAGGSLADVAHKFGGSLDEEVVRVYTREILLGLKHLHQHGIVHCDLKCKNLLMGSSGNIKLADFGCAKRVKDFKGRWQSVGGTPLWMAPEVLRNEMLDFAADIWSLGCTVIEMATGRPPWVDEVSNPMASVLRIAYGDGIPQFPTHLSKEGLDFLSRCLQKEPNKRCTIDKLLSHPFVSRRPSQKEDVASSPACVLQVQNFEDAYDDLDESESPAGNDFSIRNSFVCCDDPDGKAIWQVEDSASGSSGNWITIRSG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00089 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Rops11g00089 346 SUPERFAMILY Protein kinase-like (PK-like) 13 280 IPR011009 -
Rops11g00089 346 SMART serkin_6 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00089 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 13 307 - -
Rops11g00089 346 ProSiteProfiles Protein kinase domain profile. 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00089 346 Gene3D Transferase(Phosphotransferase) domain 1 7 310 - -
Rops11g00089 346 Pfam Protein kinase domain 17 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00089 346 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Rops11g00089 346 FunFam MAP kinase kinase kinase18 10 313 - -
Rops11g00089 346 CDD STKc_MAPKKK 14 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00089 Rops-Chr11 1405036 1406670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00089 13 344 MAP Kinase Kinase Kinase AT1G07150 38.012 5.42e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops11g00089 Pkinase 7.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00089 K20716 - gmx:100798237 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00089 11 1405036 1406670 Rops11g00089 11 1405036 1406670 ECH