Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00087 ATGTCTGAAGAGGCTGGATCCATGTTGGTAGTTTATGATGATCCCTCTGACCAACACTCGCTATCTTTGGGAGATACAAGCAGCACAGAGGAGTCACCTGATGAAACCAGGCTCTCCTTGGAAACAGCTAATGATGCTATTCCATATATTGGTCAAAGGTTTGCTACTCATGATGCTGCTTATGAATTCTACAGTGAATTTGCCAAGAGGTGTGGCTTCTCAATTAGACGTCACCGTACAGAGGGAAAAGATGGTGTTGGAAAAGGACTCACTAGAAGGTACTTTGTTTGTCATCGTGCTGGCAACACTCCTGTCAAAATGTCAACGGAAAGTAAACCTCAAAGAAATAGAAAATCTTCTCGATGTGGGTGTCAGGCTTATATGCGGATAAGCAAAACAACGGAATTTGGAGCTCCAGAATGGCGTGTGACTGGTTTCGCTAACCACCATAATCATGAACTTCTAGAACCAAACCAAGTTCGATTCCTTCCTGCATACAGAACTATCTCAGATGCTGATAAAAACCGAATCCTTATGTTTGCCAAAACAGGAATTTCCGTTCATCAAATGATGAGGCTTATGGAACTTGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACTGAAAAGGATGTAAGGAATTTACTTCAGTCATTTAGGAAATTAGATCCAGAAGAAGAAAGCTTAGATTTATTAAGAATGTGCAGAAATATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTACACACTTGATACAAACAACCGTTTGGAGAATATTGCCTGGTCATATGCCTCATCAATCCAATTGTATGATATCTTTGGTGATGCCGTGGTGTTTGATACAACACATCGCCTCACTGCATTTGACATGCCGCTAGGGATATGGGTTGGAATGAATAATTATGGGATGCCTTGCTTTTTTGGATGTGTGCTTCTACGAGATGAAACCGTCAGGTCATTTTCCTGGGCGTTGAAGGCTTTCTTAGGGTTTATGAATGGGAAGGCTCCACAGACTATATTAACTGACCAAAATATATGTCTCAAAGAAGCACTATCCACGGAAATGGCAACAACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTTAATGCTGTTCTAGGGGAACGTTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTCGAGTCAGTTGAGGATTTTGAACTAGGCTGGAGGGAAATGGTTTGTTCTTTTGGGCTGCATTCCAATCGGCACATGGTTAATCTATATAGTTCACGCTCACTTTGGGCGTTGCCATTTTTGAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGTCAGTCAAAGTCAATTAATGCTTTCATTCAACGGTTTCTGAGTGCACAGACACGGCTTGCTCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACCGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTATGCCTCAAAACAGGAGCCCCCATGGAATCACACGCTGCCTCTGTCCTCACTCCTTTTGCCTTCTCAAAGCTTCAAGAACAACTAGTGTTGGCTGCACATTATGCGTCTTTTTCAATTGAAGATGGTTTTCTTGTGAGACACCACACAAAAGCTGAAGGAGGTCGGAAAGTTTATTGGTCCCCTCAGGATGGAATTATAAGCTGCAGCTGCCACCAGTTTGAATTCTCTGGAATTCTATGTCGGCATTCTCTCAGAGTTCTTTCAACAGGAAATTGCTTTCAGATCCCAGATAGATATCTTCCCATTCGTTGGCGTCGGATCAGCATGCCCTCTTCTAAACTTCTTCAAAGTGCACCAAGTGATCATGCTGAAAGAGTTAAGTTATTGCAAAATATGGTTTCATCTCTGATTACAGAATCTGCCAAGTCTAAGGAACGATTAGATATTGCAACAGAACAAGTTTCCATCCTTCTGTCTCGCATAAGAGAGCAACCAATTTCAGTACAAGGTGTCAGAGATATTTCTTCCATTAATAGGAATCTTTGA 2040 0.4118 MSEEAGSMLVVYDDPSDQHSLSLGDTSSTEESPDETRLSLETANDAIPYIGQRFATHDAAYEFYSEFAKRCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKMSTESKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFEYTLDTNNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGMNNYGMPCFFGCVLLRDETVRSFSWALKAFLGFMNGKAPQTILTDQNICLKEALSTEMATTKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAASVLTPFAFSKLQEQLVLAAHYASFSIEDGFLVRHHTKAEGGRKVYWSPQDGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDRYLPIRWRRISMPSSKLLQSAPSDHAERVKLLQNMVSSLITESAKSKERLDIATEQVSILLSRIREQPISVQGVRDISSINRNL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00087 679 Pfam MULE transposase domain 278 370 IPR018289 -
Rops11g00087 679 MobiDBLite consensus disorder prediction 1 36 - -
Rops11g00087 679 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 654 IPR031052 GO:0006355
Rops11g00087 679 Pfam FAR1 DNA-binding domain 62 155 IPR004330 -
Rops11g00087 679 Pfam SWIM zinc finger 561 587 IPR007527 GO:0008270
Rops11g00087 679 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Rops11g00087 679 SMART 26again6 564 591 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00087 Rops-Chr11 1395380 1399282 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops11g00087 MULE 6e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00087 - - gmx:100810717 1333.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00087 11 1395380 1399282 Rops11g00087 11 1395380 1399282 ECH